CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007306.1-P	Field mustard	cytosol	99.35	99.35
CDX72067	Canola	cytosol	98.7	98.49
AT3G57130.1	Thale cress	cytosol	89.39	88.44
CDX76040	Canola	cytosol	55.41	87.97
CDY35774	Canola	cytosol	54.76	86.94
CDY30971	Canola	cytosol	84.42	85.71
CDX67678	Canola	cytosol, endoplasmic reticulum, plastid	84.42	84.42
CDX79940	Canola	cytosol	52.81	76.97
CDY23854	Canola	cytosol	77.92	74.84
CDY14765	Canola	cytosol, endoplasmic reticulum, plastid	78.57	74.54
CDY06929	Canola	cytosol, endoplasmic reticulum, plastid	77.92	73.92
PGSC0003DMT400027591	Potato	cytosol	72.29	72.45
KRH72058	Soybean	cytosol	74.24	72.06
VIT_08s0007g05740.t01	Wine grape	cytosol	76.41	72.04
Solyc04g040220.2.1	Tomato	cytosol	72.51	71.89
KRH66789	Soybean	cytosol	75.76	71.87
GSMUA_Achr5P16220_001	Banana	cytosol	66.23	69.39
Solyc10g079460.1.1	Tomato	cytosol	74.03	69.23
PGSC0003DMT400021076	Potato	cytosol	73.16	68.98
PGSC0003DMT400076710	Potato	cytosol	72.08	68.38
GSMUA_AchrUn_...	Banana	cytosol	61.9	68.26
Solyc10g079750.1.1	Tomato	cytosol	71.43	67.62
GSMUA_Achr11P...	Banana	cytosol	62.34	66.67
GSMUA_Achr5P08160_001	Banana	cytosol	61.47	66.51
GSMUA_Achr3P08710_001	Banana	cytosol	61.26	66.43
GSMUA_Achr8P22070_001	Banana	cytosol	58.01	64.58
Zm00001d011878_P001	Maize	cytosol	66.45	62.65
OQU88196	Sorghum	cytosol	67.53	61.54
TraesCS3D01G484100.1	Wheat	cytosol	67.75	61.25
Os01t0948900-01	Rice	cytosol	44.59	61.13
Zm00001d042111_P001	Maize	cytosol	67.1	61.02
TraesCS3B01G537400.1	Wheat	cytosol	67.75	60.89
TraesCS3A01G489000.1	Wheat	cytosol	67.75	60.89
HORVU3Hr1G106880.5	Barley	cytosol	67.32	60.62
GSMUA_AchrUn_...	Banana	cytosol	56.71	58.48
EES16520	Sorghum	cytosol	59.09	56.88
Zm00001d023246_P001	Maize	cytosol	58.44	56.84
Zm00001d052468_P002	Maize	cytosol	57.36	56.26
Os11t0141900-00	Rice	cytosol	59.74	55.87
Zm00001d004966_P001	Maize	cytosol	56.49	55.18
EES09234	Sorghum	cytosol	57.79	55.17
TraesCS5D01G139600.1	Wheat	cytosol	58.66	54.97
TraesCS5B01G133700.1	Wheat	cytosol	58.66	54.97
TraesCS5A01G134700.2	Wheat	cytosol	58.66	54.97
Os12t0138500-01	Rice	cytosol	37.88	53.85
Solyc05g018160.1.1	Tomato	cytosol	31.17	51.43
CDY33841	Canola	cytosol	10.39	48.48
CDY26398	Canola	plastid	26.62	21.89
CDX78955	Canola	plastid	26.84	21.09
CDX82577	Canola	plastid	24.68	21.03
CDX99350	Canola	plastid	26.62	20.92
CDY39410	Canola	plastid	24.46	20.7
CDY34413	Canola	cytosol	25.11	20.39
CDY25575	Canola	cytosol	24.68	20.0
CDX89362	Canola	cytosol	24.89	19.01
CDX89364	Canola	cytosol	24.68	18.75
CDX94371	Canola	cytosol	24.46	18.68
CDX94376	Canola	cytosol	24.46	18.65
CDY50004	Canola	cytosol	24.03	18.62
CDY36698	Canola	cytosol	17.53	15.91
CDY14314	Canola	nucleus	19.7	10.81

Protein Annotations

Gene3D:1.25.40.20	MapMan:15.5.4.7.2	Gene3D:3.30.710.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
InterPro:BTB/POZ_dom	EnsemblPlants:CDY06130	ProteinID:CDY06130	ProteinID:CDY06130.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00122012001	InterPro:IPR000210	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770
InterPro:NPR_central_dom	PFAM:PF00651	PFAM:PF11900	PFAM:PF12796	PFscan:PS50088	PFscan:PS50097
PFscan:PS50297	PANTHER:PTHR24413	PANTHER:PTHR24413:SF116	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SMART:SM00248
SUPFAM:SSF48403	SUPFAM:SSF54695	UniPathway:UPA00143	UniParc:UPI0004EDF3D8	SEG:seg	:

Description

BnaA09g36500D

Coordinates

chrLK031967:-:944324..946544

Molecular Weight (calculated)

51266.0 Da

IEP (calculated)

6.536

GRAVY (calculated)

-0.094

Length

462 amino acids

Sequence
(BLAST)

001: MKNQQEAMSS SIEESLKSMS LDYLNLLING QAFSDVTFNV EGRLIHAHRC ILAARSLFFR KFFCGSDPSQ TDPANQTGSG ARAAVVGGVI PVNSVGYEVF
101: LLLLQFLYSG QVSMVPHKHE PRSNCGDRGC WHTHCTAAVD LSLDILAAAR YFGVEQLALL TQKQLTSMVE KASIEDVMKV LIASRKHDMH QLWTTCSYLV
201: AKSGLPTEIL AKHLPIELVA KVEDLRLKSS IPLRSLMPHQ HDLTSALDLE DQKIRRMRRA LDSADVELVK LMVMGEGLNL DESLALVYAV ENCSREVVKA
301: LLELGAIDVN YPAGPTRKTA LHIASEMVSP DMVAVLLDHH ADPNVQTVDG ITPLDILRTL TSDFLFKGTV PGLTHVEPNK LRLCLELVQS AALVMSREEG
401: INSDNNTVMY PRLKDEHMSG SSLDSRLVYL NLGGEHGNQM EGMSLHHHHE PPTMYHHHHH HF

Best Arabidopsis Sequence Match ( AT3G57130.1 )
(BLAST)

001: MSNTFEESLK SMSLDYLNLL INGQAFSDVT FSVEGRLVHA HRCILAARSL FFRKFFCESD PSQPGAEPAN QTGSGARAAA VGGVIPVNSV GYEVFLLLLQ
101: FLYSGQVSIV PHKHEPRSNC GDRGCWHTHC TAAVDLSLDI LAAARYFGVE QLALLTQKHL TSMVEKASIE DVMKVLIASR KQDMHQLWTT CSYLIAKSGL
201: PQEILAKHLP IELVAKIEEL RLKSSMPLRS LMPHHHDLTS TLDLEDQKIR RMRRALDSSD VELVKLMVMG EGLNLDESLA LIYAVENCSR EVVKALLELG
301: AADVNYPAGP TGKTALHIAA EMVSPDMVAV LLDHHADPNV QTVDGITPLD ILRTLTSDFL FKGAIPGLTH IEPNKLRLCL ELVQSAALVI SREEGNNNSN
401: DNNTMIYPRM KDEHTSGSSL DSRLVYLNLG ATNRDIGDDN SNQREGMNLH HHHHDPSTMY HHHHHHF

Arabidopsis Description

NPR6Regulatory protein NPR6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1I7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.