CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, cytosol

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, plastid
Any Predictor:	cytosol, endoplasmic reticulum, nucleus
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003268.1-P	Field mustard	cytosol, endoplasmic reticulum, plastid	97.62	97.62
CDX76040	Canola	cytosol	54.33	86.25
AT3G57130.1	Thale cress	cytosol	86.58	85.65
CDY35774	Canola	cytosol	53.68	85.22
CDX72067	Canola	cytosol	84.63	84.45
CDY06130	Canola	cytosol	84.42	84.42
CDY30971	Canola	cytosol	81.6	82.86
CDX79940	Canola	cytosol	53.25	77.6
CDY23854	Canola	cytosol	76.19	73.18
CDY14765	Canola	cytosol, endoplasmic reticulum, plastid	76.19	72.28
CDY06929	Canola	cytosol, endoplasmic reticulum, plastid	75.76	71.87
PGSC0003DMT400027591	Potato	cytosol	71.21	71.37
VIT_08s0007g05740.t01	Wine grape	cytosol	74.68	70.41
KRH72058	Soybean	cytosol	72.29	70.17
Solyc04g040220.2.1	Tomato	cytosol	70.56	69.96
KRH66789	Soybean	cytosol	73.59	69.82
PGSC0003DMT400021076	Potato	cytosol	72.73	68.57
GSMUA_Achr5P16220_001	Banana	cytosol	65.37	68.48
Solyc10g079460.1.1	Tomato	cytosol	72.94	68.22
PGSC0003DMT400076710	Potato	cytosol	71.21	67.56
Solyc10g079750.1.1	Tomato	cytosol	71.0	67.21
GSMUA_AchrUn_...	Banana	cytosol	60.39	66.59
GSMUA_Achr5P08160_001	Banana	cytosol	60.82	65.81
GSMUA_Achr11P...	Banana	cytosol	60.82	65.05
GSMUA_Achr3P08710_001	Banana	cytosol	59.74	64.79
GSMUA_Achr8P22070_001	Banana	cytosol	56.28	62.65
Zm00001d011878_P001	Maize	cytosol	65.58	61.84
Os01t0948900-01	Rice	cytosol	44.37	60.83
OQU88196	Sorghum	cytosol	66.23	60.35
TraesCS3D01G484100.1	Wheat	cytosol	66.67	60.27
TraesCS3B01G537400.1	Wheat	cytosol	66.67	59.92
TraesCS3A01G489000.1	Wheat	cytosol	66.67	59.92
Zm00001d042111_P001	Maize	cytosol	65.8	59.84
HORVU3Hr1G106880.5	Barley	cytosol	66.23	59.65
GSMUA_AchrUn_...	Banana	cytosol	54.98	56.7
EES16520	Sorghum	cytosol	58.01	55.83
Zm00001d023246_P001	Maize	cytosol	57.36	55.79
Zm00001d052468_P002	Maize	cytosol	56.06	54.99
Os11t0141900-00	Rice	cytosol	58.01	54.25
EES09234	Sorghum	cytosol	56.71	54.13
Zm00001d004966_P001	Maize	cytosol	55.19	53.91
TraesCS5A01G134700.2	Wheat	cytosol	57.36	53.75
TraesCS5D01G139600.1	Wheat	cytosol	57.36	53.75
TraesCS5B01G133700.1	Wheat	cytosol	57.36	53.75
Solyc05g018160.1.1	Tomato	cytosol	32.25	53.21
Os12t0138500-01	Rice	cytosol	37.01	52.62
CDY33841	Canola	cytosol	10.39	48.48
CDY26398	Canola	plastid	26.19	21.53
CDX78955	Canola	plastid	26.19	20.58
CDY34413	Canola	cytosol	25.32	20.56
CDX99350	Canola	plastid	25.97	20.41
CDX82577	Canola	plastid	23.81	20.3
CDY25575	Canola	cytosol	24.89	20.18
CDY39410	Canola	plastid	23.81	20.15
CDX89364	Canola	cytosol	25.54	19.41
CDX94376	Canola	cytosol	25.32	19.31
CDY50004	Canola	cytosol	24.89	19.3
CDX89362	Canola	cytosol	23.81	18.18
CDX94371	Canola	cytosol	23.59	18.02
CDY36698	Canola	cytosol	16.67	15.13
CDY14314	Canola	nucleus	20.56	11.28

Protein Annotations

Gene3D:1.25.40.20	MapMan:15.5.4.7.2	Gene3D:3.30.710.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
InterPro:BTB/POZ_dom	EnsemblPlants:CDX67678	ProteinID:CDX67678	ProteinID:CDX67678.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00098851001	InterPro:IPR000210	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770
InterPro:NPR_central_dom	PFAM:PF00651	PFAM:PF11900	PFAM:PF12796	PFscan:PS50088	PFscan:PS50097
PFscan:PS50297	PANTHER:PTHR24413	PANTHER:PTHR24413:SF116	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SMART:SM00248
SUPFAM:SSF48403	SUPFAM:SSF54695	UniPathway:UPA00143	UniParc:UPI0004EEE384	SEG:seg	:

Description

BnaA07g17180D

Coordinates

chrLK031787:+:1698035..1700232

Molecular Weight (calculated)

51507.9 Da

IEP (calculated)

6.817

GRAVY (calculated)

-0.151

Length

462 amino acids

Sequence
(BLAST)

001: MTSCIEESLS LDYLNLLING QAFSDVTFSL EGRLVHAHRC ILAARSLFFR KFFYGSDPPQ TVTSSASGAR VASVGGVVPV NSVSYEVFLL LLQFLYSGQV
101: SLVPHKHESR SNCGDRGCWH TQCTAAVDLS LDILAAARYF GVEQLALLTQ KHLTSMVEKA SIEDVMKVLI ASRKQDMHQL WTTCSYLVAK SGFPTEILAK
201: HLPIELLGKV EELRLKSSIP LRSLMPHQQD QNSALNLEDQ KIKRMRRALD SSDFELVKLM VMGEGLNLDE SLALFYAVEN CSREVVKALL ELGAADVNHP
301: AGPTRKTALH IAAEMVSPDM VAVLLDHHAD PTVQTVDGIT PLDILRTLTS DFLFKGTIHG LTHIEPNKLR LCLELVQSAA MVISREEGNN NNNVNNTVIY
401: PRMKDKRTKG SSLDSRLVYL NRGATNPDFG DEHGIQTEET GLHHHHYHDP STMYHHHHHH HF

Best Arabidopsis Sequence Match ( AT3G57130.1 )
(BLAST)

001: MSNTFEESLK SMSLDYLNLL INGQAFSDVT FSVEGRLVHA HRCILAARSL FFRKFFCESD PSQPGAEPAN QTGSGARAAA VGGVIPVNSV GYEVFLLLLQ
101: FLYSGQVSIV PHKHEPRSNC GDRGCWHTHC TAAVDLSLDI LAAARYFGVE QLALLTQKHL TSMVEKASIE DVMKVLIASR KQDMHQLWTT CSYLIAKSGL
201: PQEILAKHLP IELVAKIEEL RLKSSMPLRS LMPHHHDLTS TLDLEDQKIR RMRRALDSSD VELVKLMVMG EGLNLDESLA LIYAVENCSR EVVKALLELG
301: AADVNYPAGP TGKTALHIAA EMVSPDMVAV LLDHHADPNV QTVDGITPLD ILRTLTSDFL FKGAIPGLTH IEPNKLRLCL ELVQSAALVI SREEGNNNSN
401: DNNTMIYPRM KDEHTSGSSL DSRLVYLNLG ATNRDIGDDN SNQREGMNLH HHHHDPSTMY HHHHHHF

Arabidopsis Description

NPR6Regulatory protein NPR6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1I7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.