Factsheet for PGSC0003DMT400027591

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009142
PGSC0003DMT400009146
PGSC0003DMT400092162

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41370.1	PGSC0003DMT400009142	AT3G51180.1	21798944
AT2G41370.1	PGSC0003DMT400009146	AT3G51180.1	21798944
AT2G41370.1	PGSC0003DMT400092162	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g040220.2.1	Tomato	cytosol	96.96	95.92
VIT_08s0007g05740.t01	Wine grape	cytosol	82.65	77.76
PGSC0003DMT400076710	Potato	cytosol	81.34	77.0
CDX79940	Canola	cytosol	52.49	76.34
PGSC0003DMT400021076	Potato	cytosol	81.13	76.33
Bra004617.1-P	Field mustard	cytosol	52.28	76.03
KRH72058	Soybean	cytosol	77.66	75.21
AT2G41370.1	Thale cress	cytosol	79.18	74.34
GSMUA_Achr5P16220_001	Banana	cytosol	70.93	74.15
KRH66789	Soybean	cytosol	78.09	73.92
CDY23854	Canola	cytosol	77.01	73.8
AT3G57130.1	Thale cress	cytosol	74.62	73.66
CDY14765	Canola	cytosol, endoplasmic reticulum, plastid	77.66	73.51
CDY06929	Canola	cytosol, endoplasmic reticulum, plastid	77.44	73.31
Bra007306.1-P	Field mustard	cytosol	72.67	72.51
CDX72067	Canola	cytosol	72.67	72.35
CDY06130	Canola	cytosol	72.45	72.29
Bra016938.1-P	Field mustard	cytosol	76.36	72.28
CDX76040	Canola	cytosol	45.34	71.82
Bra014645.1-P	Field mustard	cytosol	45.12	71.48
Bra003268.1-P	Field mustard	cytosol, endoplasmic reticulum, plastid	71.58	71.43
CDX67678	Canola	cytosol, endoplasmic reticulum, plastid	71.37	71.21
CDY35774	Canola	cytosol	44.69	70.79
GSMUA_Achr11P...	Banana	cytosol	65.29	69.68
GSMUA_Achr5P08160_001	Banana	cytosol	64.43	69.56
GSMUA_AchrUn_...	Banana	cytosol	63.12	69.45
CDY30971	Canola	cytosol	68.55	69.45
GSMUA_Achr3P08710_001	Banana	cytosol	63.99	69.25
GSMUA_Achr8P22070_001	Banana	cytosol	61.17	67.95
Zm00001d011878_P001	Maize	cytosol	71.15	66.94
OQU88196	Sorghum	cytosol	72.23	65.68
Os01t0948900-01	Rice	cytosol	47.94	65.58
Zm00001d042111_P001	Maize	cytosol	70.93	64.37
TraesCS3A01G489000.1	Wheat	cytosol	71.15	63.81
TraesCS3D01G484100.1	Wheat	cytosol	70.5	63.6
HORVU3Hr1G106880.5	Barley	cytosol	70.72	63.55
TraesCS3B01G537400.1	Wheat	cytosol	70.72	63.42
GSMUA_AchrUn_...	Banana	cytosol	59.44	61.16
Zm00001d052468_P002	Maize	cytosol	60.3	59.02
EES16520	Sorghum	cytosol	61.39	58.96
Zm00001d023246_P001	Maize	cytosol	60.3	58.53
Zm00001d004966_P001	Maize	cytosol	59.44	57.93
EES09234	Sorghum	cytosol	60.74	57.85
Os11t0141900-00	Rice	cytosol	61.39	57.29
TraesCS5A01G134700.2	Wheat	cytosol	61.17	57.2
TraesCS5B01G133700.1	Wheat	cytosol	61.17	57.2
TraesCS5D01G139600.1	Wheat	cytosol	61.17	57.2
Os12t0138500-01	Rice	cytosol	39.26	55.69
CDY33841	Canola	cytosol	9.98	46.46
PGSC0003DMT400054660	Potato	cytosol, plastid	29.07	23.06
PGSC0003DMT400002412	Potato	cytosol	27.98	22.43

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:102595090	MapMan:15.5.4.7.2	Gene3D:3.30.710.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000210
InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	UniProt:M1APW4	InterPro:NPR_central_dom	PFAM:PF00651
PFAM:PF11900	PFAM:PF12796	EnsemblPlantsGene:PGSC0003DMG400010635	PGSC:PGSC0003DMG400010635	EnsemblPlants:PGSC0003DMT400027591	PFscan:PS50088
PFscan:PS50097	PFscan:PS50297	PANTHER:PTHR24413	PANTHER:PTHR24413:SF116	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225
SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF54695	UniParc:UPI0002956736	RefSeq:XP_006364431.1	SEG:seg

Description

BOP/NPR1/NIM1-like regulatory protein [Source:PGSC_GENE;Acc:PGSC0003DMG400010635]

Coordinates

chr4:+:12312000..12314505

Molecular Weight (calculated)

50649.9 Da

IEP (calculated)

6.505

GRAVY (calculated)

-0.116

Length

461 amino acids

Sequence
(BLAST)

001: MSSNPEDSLR SLSLDYLNLL INGQAFSDVT FHVEGHLVHA HRCVLAARSQ FFRKFFCGPS SPQSGPQLGP VNGPRDTGSP ASVVIPVNSV GYEVFLLMMQ
101: FLYSGQVSIV PQKHEPRPNC GERGCWHTHC TSAVDLALDT LSAARSFGVE QLALLTQKQL AIMVEKASIE DVMRVLIASR KQDMNQLWTT CSHLVAKSGL
201: PPEMLAKHLP IDVVAKIEEL RLKSNLARRS LMPHHHHHLD LSSAAELEDQ KIRRMRRALD SSDVELVKLM VMGEGLNLDE SIALHYAVEN CSREVVKALL
301: ELGAADVNFP AGPAGKTPLH IAAEMVSPDM VAVLLDHHAD PNVRMLDGIT PLDILRTLTS DFLFKGTVPG HVHIEPNKLR LCLELVQSAA MVILREEGSA
401: NIDLSSTNIY PPNNMSDDHT SSTSSGTNID SRMVYLNLGA GVTNTSTHDH PSSMYHHSHE Y

Best Arabidopsis Sequence Match ( AT2G41370.1 )
(BLAST)

001: MSNLEESLRS LSLDFLNLLI NGQAFSDVTF SVEGRLVHAH RCILAARSLF FRKFFCGTDS PQPVTGIDPT QHGSVPASPT RGSTAPAGII PVNSVGYEVF
101: LLLLQFLYSG QVSIVPQKHE PRPNCGERGC WHTHCSAAVD LALDTLAASR YFGVEQLALL TQKQLASMVE KASIEDVMKV LIASRKQDMH QLWTTCSHLV
201: AKSGLPPEIL AKHLPIDVVT KIEELRLKSS IARRSLMPHN HHHDLSVAQD LEDQKIRRMR RALDSSDVEL VKLMVMGEGL NLDESLALHY AVESCSREVV
301: KALLELGAAD VNYPAGPAGK TPLHIAAEMV SPDMVAVLLD HHADPNVRTV GGITPLDILR TLTSDFLFKG AVPGLTHIEP NKLRLCLELV QSAAMVISRE
401: EGNNSNNQNN DNNTGIYPHM NEEHNSGSSG GSNNNLDSRL VYLNLGAGTG QMGPGRDQGD DHNSQREGMS RHHHHHQDPS TMYHHHHQHH F

Arabidopsis Description

NPR5Regulatory protein NPR5 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.