Factsheet for VIT_08s0007g05740.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0023g03180.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41370.1	VIT_04s0023g03180.t01	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72058	Soybean	cytosol	81.43	83.82
PGSC0003DMT400027591	Potato	cytosol	77.76	82.65
KRH66789	Soybean	cytosol	82.04	82.55
CDX79940	Canola	cytosol	53.27	82.33
Bra004617.1-P	Field mustard	cytosol	53.06	82.02
Solyc04g040220.2.1	Tomato	cytosol	77.14	81.12
AT2G41370.1	Thale cress	cytosol	80.2	80.04
CDY23854	Canola	cytosol	78.16	79.63
AT3G57130.1	Thale cress	cytosol	75.31	79.02
CDY14765	Canola	cytosol, endoplasmic reticulum, plastid	78.37	78.85
CDY06929	Canola	cytosol, endoplasmic reticulum, plastid	78.16	78.64
PGSC0003DMT400076710	Potato	cytosol	77.35	77.82
Solyc10g079750.1.1	Tomato	cytosol	77.14	77.46
Bra016938.1-P	Field mustard	cytosol	76.94	77.41
PGSC0003DMT400021076	Potato	cytosol	76.73	76.73
Bra007306.1-P	Field mustard	cytosol	72.24	76.62
CDX72067	Canola	cytosol	72.24	76.46
GSMUA_Achr5P16220_001	Banana	cytosol	68.78	76.42
CDY06130	Canola	cytosol	72.04	76.41
Solyc10g079460.1.1	Tomato	cytosol	76.12	75.51
CDX76040	Canola	cytosol	44.69	75.26
Bra014645.1-P	Field mustard	cytosol	44.49	74.91
Bra003268.1-P	Field mustard	cytosol, endoplasmic reticulum, plastid	70.41	74.68
CDX67678	Canola	cytosol, endoplasmic reticulum, plastid	70.41	74.68
GSMUA_Achr5P08160_001	Banana	cytosol	64.9	74.47
GSMUA_AchrUn_...	Banana	cytosol	63.67	74.46
GSMUA_Achr11P...	Banana	cytosol	65.51	74.31
CDY35774	Canola	cytosol	44.08	74.23
GSMUA_Achr3P08710_001	Banana	cytosol	64.29	73.94
CDY30971	Canola	cytosol	67.35	72.53
GSMUA_Achr8P22070_001	Banana	cytosol	61.02	72.05
Zm00001d011878_P001	Maize	cytosol	71.63	71.63
Os01t0948900-01	Rice	cytosol	48.98	71.22
OQU88196	Sorghum	cytosol	73.47	71.01
Zm00001d042111_P001	Maize	cytosol	72.24	69.69
TraesCS3D01G484100.1	Wheat	cytosol	71.22	68.3
TraesCS3A01G489000.1	Wheat	cytosol	71.63	68.29
HORVU3Hr1G106880.5	Barley	cytosol	71.43	68.23
TraesCS3B01G537400.1	Wheat	cytosol	71.43	68.09
GSMUA_AchrUn_...	Banana	cytosol	59.39	64.96
EES16520	Sorghum	cytosol	61.43	62.71
Zm00001d052468_P002	Maize	cytosol	60.2	62.63
Zm00001d023246_P001	Maize	cytosol	60.41	62.32
Os11t0141900-00	Rice	cytosol	62.24	61.74
EES09234	Sorghum	cytosol	60.82	61.57
Zm00001d004966_P001	Maize	cytosol	59.18	61.31
TraesCS5A01G134700.2	Wheat	cytosol	61.43	61.05
TraesCS5B01G133700.1	Wheat	cytosol	61.43	61.05
TraesCS5D01G139600.1	Wheat	cytosol	61.43	61.05
Solyc05g018160.1.1	Tomato	cytosol	34.49	60.36
Os12t0138500-01	Rice	cytosol	39.59	59.69
VIT_10s0042g01250.t01	Wine grape	cytosol, plastid	29.59	24.7
VIT_11s0016g01990.t01	Wine grape	cytosol	25.71	21.58

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:100241869	wikigene:100241869	MapMan:15.5.4.7.2	Gene3D:3.30.710.10	EMBL:AM427664
InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:BTB/POZ_dom	ProteinID:CAN80112	ProteinID:CAN80112.1
ProteinID:CCB55300	ProteinID:CCB55300.1	UniProt:F6HLP4	EMBL:FN595991	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006464	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009605	GO:GO:0009607	GO:GO:0009719	GO:GO:0009864	GO:GO:0009987
GO:GO:0019005	GO:GO:0019538	GO:GO:0030162	GO:GO:0031625	GO:GO:0042787	GO:GO:0043161
InterPro:IPR000210	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	EntrezGene:LOC100241869	wikigene:LOC100241869
InterPro:NPR_central_dom	PFAM:PF00651	PFAM:PF11900	PFAM:PF12796	PFscan:PS50088	PFscan:PS50097
PFscan:PS50297	PANTHER:PTHR24413	PANTHER:PTHR24413:SF116	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SMART:SM00248
SUPFAM:SSF48403	SUPFAM:SSF54695	UniParc:UPI00015CAED2	ArrayExpress:VIT_08s0007g05740	EnsemblPlantsGene:VIT_08s0007g05740	EnsemblPlants:VIT_08s0007g05740.t01
unigene:Vvi.24137	RefSeq:XP_002275980	RefSeq:XP_002275980.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:-:19658115..19660943

Molecular Weight (calculated)

53292.8 Da

IEP (calculated)

6.569

GRAVY (calculated)

-0.145

Length

490 amino acids

Sequence
(BLAST)

001: MTLEDSLRSL SLDYLNLLIN GQAFSDVTFN VEGRLVHAHR CILAARSLFF RKFFCGPDPP AGLDPGGSRM GSAAAALATS PRGGNSHVIP VNSVGYEVFL
101: LVLQFLYSGQ VSIVPQKHEP RPNCGERGCW HTHCTSAVDL ALDTLAAARS FGVEQLALLT QKQLASMVEK ASIEDVMKVL IASRKQDMHQ LWTTCSHLVA
201: KSGLPPEVLA KHLPIDVVAK IEELRLKSSL ARRSLMPHHH HHQDIGAAAD LEDQKIRRMR RALDSSDVEL VKLMVMGEGL NLDEALALHY AVENCSREVV
301: KALLELGAAD VNYPAGPAGK TPLHIAAEMV SPDMVAVLLD HHADPNVRTV DGVTPLDVLR TLTSDFLFKG AVPGLTHIEP NKLRLCLELV QSAALVLSRE
401: EGSANAPSST TIYPPMSDDH HSSSSSSNMA SLNLDSRLVY LNLGATGSGQ MGSRMDREDD VSHNNQREAM NRHGSQGGCD TSMYHHSHEY

Best Arabidopsis Sequence Match ( AT2G41370.1 )
(BLAST)

001: MSNLEESLRS LSLDFLNLLI NGQAFSDVTF SVEGRLVHAH RCILAARSLF FRKFFCGTDS PQPVTGIDPT QHGSVPASPT RGSTAPAGII PVNSVGYEVF
101: LLLLQFLYSG QVSIVPQKHE PRPNCGERGC WHTHCSAAVD LALDTLAASR YFGVEQLALL TQKQLASMVE KASIEDVMKV LIASRKQDMH QLWTTCSHLV
201: AKSGLPPEIL AKHLPIDVVT KIEELRLKSS IARRSLMPHN HHHDLSVAQD LEDQKIRRMR RALDSSDVEL VKLMVMGEGL NLDESLALHY AVESCSREVV
301: KALLELGAAD VNYPAGPAGK TPLHIAAEMV SPDMVAVLLD HHADPNVRTV GGITPLDILR TLTSDFLFKG AVPGLTHIEP NKLRLCLELV QSAAMVISRE
401: EGNNSNNQNN DNNTGIYPHM NEEHNSGSSG GSNNNLDSRL VYLNLGAGTG QMGPGRDQGD DHNSQREGMS RHHHHHQDPS TMYHHHHQHH F

Arabidopsis Description

NPR5Regulatory protein NPR5 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.