Factsheet for VIT_10s0042g01250.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 4
cytosol 2
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_13s0084g00660.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45110.1	VIT_13s0084g00660.t01	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36735	Soybean	cytosol, plastid	79.56	79.15
KRH11740	Soybean	plastid	78.88	78.47
PGSC0003DMT400054660	Potato	cytosol, plastid	72.57	73.32
Solyc02g069310.2.1	Tomato	cytosol, plastid	72.06	72.81
GSMUA_Achr4P32060_001	Banana	cytosol, plastid	67.46	66.55
GSMUA_Achr5P02120_001	Banana	cytosol	65.76	66.1
Bra021949.1-P	Field mustard	plastid	59.45	62.1
CDY26398	Canola	plastid	59.45	62.1
CDX82577	Canola	plastid	57.07	61.81
Bra025093.1-P	Field mustard	plastid	57.07	61.36
CDY39410	Canola	plastid	57.07	61.36
AT5G45110.1	Thale cress	cytosol, plastid	60.82	60.92
CDX99350	Canola	plastid	59.97	59.86
CDX78955	Canola	plastid	59.45	59.35
Bra013416.1-P	Field mustard	plastid	59.11	59.01
EES01524	Sorghum	plastid	61.84	58.45
Zm00001d012660_P002	Maize	cytosol	61.5	58.13
TraesCS3D01G302900.1	Wheat	cytosol, plastid	59.28	57.33
TraesCS3B01G337700.1	Wheat	plastid	59.11	56.98
TraesCS3A01G298800.1	Wheat	plastid	59.45	56.47
Os01t0767900-01	Rice	plastid	60.99	56.38
HORVU3Hr1G074640.4	Barley	cytosol, plastid	59.11	56.24
AT4G19660.2	Thale cress	cytosol, plastid	57.58	56.24
Os03t0667100-01	Rice	cytosol	52.3	52.12
Zm00001d013581_P001	Maize	cytosol	17.38	50.75
EER91108	Sorghum	plastid	51.11	50.17
Zm00001d034944_P004	Maize	cytosol	38.67	49.89
HORVU4Hr1G003040.1	Barley	cytosol, plastid	49.23	49.07
TraesCS4B01G018900.2	Wheat	cytosol, plastid	49.91	48.75
TraesCS4D01G017500.1	Wheat	cytosol	49.4	48.66
TraesCS4A01G294400.1	Wheat	cytosol, plastid	49.74	48.59
CDY36698	Canola	cytosol	41.4	47.74
VIT_11s0016g01990.t01	Wine grape	cytosol	43.78	44.01
VIT_08s0007g05740.t01	Wine grape	cytosol	24.7	29.59

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:100247744	wikigene:100247744	MapMan:11.8.2.1	Gene3D:3.30.710.10	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:BTB/POZ_dom	ProteinID:CCB52135	ProteinID:CCB52135.1	ncoils:Coil
UniProt:F6HIT9	EMBL:FN595766	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0006950	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009605	GO:GO:0009607
GO:GO:0009719	GO:GO:0009987	GO:GO:0019005	GO:GO:0019538	GO:GO:0030162	GO:GO:0031625
GO:GO:0042742	GO:GO:0042787	GO:GO:0043161	GO:GO:2000022	InterPro:IPR000210	InterPro:IPR002110
InterPro:IPR020683	InterPro:IPR036770	EntrezGene:LOC100247744	wikigene:LOC100247744	InterPro:NPR1/NIM1-like_C	InterPro:NPR_central_dom
PFAM:PF00651	PFAM:PF11900	PFAM:PF12313	PFAM:PF12796	PFscan:PS50088	PFscan:PS50097
PFscan:PS50297	PANTHER:PTHR24413	PANTHER:PTHR24413:SF124	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SMART:SM00248
SUPFAM:SSF48403	SUPFAM:SSF54695	TIGR:TC54056	UniParc:UPI00015CBA33	ArrayExpress:VIT_10s0042g01250	EnsemblPlantsGene:VIT_10s0042g01250
EnsemblPlants:VIT_10s0042g01250.t01	unigene:Vvi.11023	RefSeq:XP_002274045	RefSeq:XP_002274045.1	RefSeq:XP_003633057	RefSeq:XP_003633057.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr10:+:15258093..15267553

Molecular Weight (calculated)

65535.3 Da

IEP (calculated)

6.672

GRAVY (calculated)

-0.266

Length

587 amino acids

Sequence
(BLAST)

001: MANSAEPSSS LSFTSSSHIS NAVTSHNMSS SSGSETGPSL EIISLSKLSS NLEQLLVDSG CDYSDAEIIV EGIPVGVHRC ILAARSRFFY DLFKREKSSS
101: EKDGKPRYCM SDFLPYGKVG YEAFLIFLSY LYTGKLKASP LEVSTCVDTG CAHDACRPAI DFSVELMYAS AIFQVPELVS LFQRRLTNFI GKALLEDVIP
201: ILVVAYHCKS SVLVNQCVDR VARSDLDSIS LEKDLPYEVA ESIKLLRLKS QPDDECNTVP VDPVHEKRVR RILKALDSDD VELVKLLLSE SGITLDEAYA
301: LHYAAAYCDP KVVSEVLSLG LADVNRHNPR GYTVLHVAAM RKEPSIIVSL LTKGAHASER TSDGQSAVSI CRRLTRPKDY HAKMEQGQET NKDRICIDVL
401: EREMRRNPLA GDVSISSPTM ADDLHMKLLY LENRVAFARL FFPSEAKLAM EIAHAETTSE FAGLSASKRS SGNLREVDLN ETPIMQNQRL RSRMNALVKT
501: VEMGRRYFPH CSQVLDKFME DDLPDLFYLE KGTLDEQRIK RTRFMELKED VQRAFTKDKA EFNRSGLSSS SSSSSLKDNL SHKARKL

Best Arabidopsis Sequence Match ( AT5G45110.1 )
(BLAST)

001: MATLTEPSSS LSFTSSHFSY GSIGSNHFSS SSASNPEVVS LTKLSSNLEQ LLSNSDCDYS DAEIIVDGVP VGVHRCILAA RSKFFQDLFK KEKKISKTEK
101: PKYQLREMLP YGAVAHEAFL YFLSYIYTGR LKPFPLEVST CVDPVCSHDC CRPAIDFVVQ LMYASSVLQV PELVSSFQRR LCNFVEKTLV ENVLPILMVA
201: FNCKLTQLLD QCIERVARSD LYRFCIEKEV PPEVAEKIKQ LRLISPQDEE TSPKISEKLL ERIGKILKAL DSDDVELVKL LLTESDITLD QANGLHYSVV
301: YSDPKVVAEI LALDMGDVNY RNSRGYTVLH FAAMRREPSI IISLIDKGAN ASEFTSDGRS AVNILRRLTN PKDYHTKTAK GRESSKARLC IDILEREIRK
401: NPMVLDTPMC SISMPEDLQM RLLYLEKRVG LAQLFFPTEA KVAMDIGNVE GTSEFTGLSP PSSGLTGNLS QVDLNETPHM QTQRLLTRMV ALMKTVETGR
501: RFFPYGSEVL DKYMAEYIDD DILDDFHFEK GSTHERRLKR MRYRELKDDV QKAYSKDKES KIARSCLSAS SSPSSSSIRD DLHNTT

Arabidopsis Description

NPR3NPR3 [Source:UniProtKB/TrEMBL;Acc:A0A178UGU4]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.