Factsheet for TraesCS3A01G298800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G096300.1
TraesCS1B01G127400.1
TraesCS1D01G105300.1
TraesCS2A01G097500.2
TraesCS2B01G113200.2
TraesCS2D01G096800.2
TraesCS3A01G190700.2
TraesCS3A01G334100.1
TraesCS3B01G220400.2
TraesCS3B01G365100.1
TraesCS3D01G194800.2
TraesCS3D01G327600.1
TraesCS4A01G126300.2
TraesCS4B01G178600.1
TraesCS4D01G180200.4

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45110.1	TraesCS1A01G096300.1	AT5G06960.1	21798944
AT5G45110.1	TraesCS1B01G127400.1	AT5G06960.1	21798944
AT5G45110.1	TraesCS1D01G105300.1	AT5G06960.1	21798944
AT5G45110.1	TraesCS2A01G097500.2	AT5G06960.1	21798944
AT5G45110.1	TraesCS2B01G113200.2	AT5G06960.1	21798944
AT5G45110.1	TraesCS2D01G096800.2	AT5G06960.1	21798944
AT5G45110.1	TraesCS3A01G190700.2	AT5G06960.1	21798944
AT5G45110.1	TraesCS3A01G334100.1	AT5G06960.1	21798944
AT5G45110.1	TraesCS3B01G220400.2	AT5G06960.1	21798944
AT5G45110.1	TraesCS3B01G365100.1	AT5G06960.1	21798944
AT5G45110.1	TraesCS3D01G194800.2	AT5G06960.1	21798944
AT5G45110.1	TraesCS3D01G327600.1	AT5G06960.1	21798944
AT5G45110.1	TraesCS4A01G126300.2	AT5G06960.1	21798944
AT5G45110.1	TraesCS4B01G178600.1	AT5G06960.1	21798944
AT5G45110.1	TraesCS4D01G180200.4	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G337700.1	Wheat	plastid	96.6	98.03
TraesCS3D01G302900.1	Wheat	cytosol, plastid	96.12	97.86
HORVU3Hr1G074640.4	Barley	cytosol, plastid	93.85	94.0
Zm00001d012660_P002	Maize	cytosol	78.48	78.1
EES01524	Sorghum	plastid	78.32	77.94
Os01t0767900-01	Rice	plastid	79.61	77.48
GSMUA_Achr5P02120_001	Banana	cytosol	61.65	65.24
GSMUA_Achr4P32060_001	Banana	cytosol, plastid	62.14	64.54
VIT_10s0042g01250.t01	Wine grape	cytosol, plastid	56.47	59.45
KRH36735	Soybean	cytosol, plastid	55.99	58.64
KRH11740	Soybean	plastid	55.18	57.8
PGSC0003DMT400054660	Potato	cytosol, plastid	52.75	56.11
Solyc02g069310.2.1	Tomato	cytosol, plastid	52.1	55.42
KRH73603	Soybean	cytosol, plastid	49.68	52.03
CDY26398	Canola	plastid	46.76	51.42
KRH14520	Soybean	cytosol, plastid	49.03	51.36
Bra013416.1-P	Field mustard	plastid	48.54	51.02
CDX78955	Canola	plastid	48.54	51.02
CDX99350	Canola	plastid	48.38	50.85
PGSC0003DMT400002412	Potato	cytosol	47.25	50.78
CDX82577	Canola	plastid	44.5	50.74
CDY39410	Canola	plastid	44.66	50.55
Solyc07g044980.2.1	Tomato	nucleus	46.76	50.44
Bra025093.1-P	Field mustard	plastid	44.5	50.37
Bra021949.1-P	Field mustard	plastid	45.79	50.36
AT5G45110.1	Thale cress	cytosol, plastid	47.57	50.17
TraesCS4A01G294400.1	Wheat	cytosol, plastid	48.06	49.42
AT4G19660.2	Thale cress	cytosol, plastid	47.73	49.08
CDY36698	Canola	cytosol	32.85	39.88
TraesCS4A01G470500.1	Wheat	cytosol	31.07	39.26
TraesCS3A01G105400.1	Wheat	cytosol	36.25	38.82
TraesCS7A01G021800.1	Wheat	cytosol, plastid	31.23	34.53
TraesCS3A01G489000.1	Wheat	cytosol	20.55	24.71
TraesCS5A01G134700.2	Wheat	cytosol	19.58	24.54
TraesCS7A01G022800.1	Wheat	cytosol	33.66	13.89

Protein Annotations

Gene3D:1.25.40.20	MapMan:11.8.2.1	Gene3D:3.30.710.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000210	InterPro:IPR002110
InterPro:IPR020683	InterPro:IPR036770	InterPro:NPR1/NIM1-like_C	InterPro:NPR_central_dom	PFAM:PF00651	PFAM:PF11900
PFAM:PF12313	PFAM:PF13637	PFscan:PS50088	PFscan:PS50097	PFscan:PS50297	PANTHER:PTHR24413
PANTHER:PTHR24413:SF124	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF54695
EnsemblPlantsGene:TraesCS3A01G298800	EnsemblPlants:TraesCS3A01G298800.1	TIGR:cd00204	SEG:seg	:	:

Description

No Description!

Coordinates

chr3A:-:532934791..532937611

Molecular Weight (calculated)

67457.5 Da

IEP (calculated)

5.604

GRAVY (calculated)

-0.252

Length

618 amino acids

Sequence
(BLAST)

001: MEPSSSITFA SSSSYLSNGS SPCSGALAPL PAADGWGGGG GGGGGGSSSS VEAVSLNRLS SNLERLLLDS ELDCSDADVD VADGGPPIPV HRCILAVRSS
101: FFHDLFRARG SRSDGAVTAS ASATGGGAGG DVNGRPQYKM EDLVPGGRVG REAFLAFMGY LYTGRLRPAP LDVVSCADLV CPHDSCPPAI RFAVELMYAA
201: WTFRIPELMS LFQLQARNVR LMRRLMNFVD KTLAEDVLPI LQVAFHSELT QVREKCVQRI ARSDLDIMSL DKELPPEIAD EIKKIRQKSP PIDGDTIISD
301: PVHEKRVRRI HRALDSDDVE LVKLLLNESE ITLDDANALH YAAAYCDSKV LTELLGLELA NLNLKNSRGY TALHLAAMRR EPAIIMCLLS KGAVASQLTD
401: DGRLASNICR RLTRLKDYNA KMEQGQESNK DRMCIDILER EMMRNPMTAE DSVTSPLLAD DLHMKLSYLE NRVAFARLFF PAEAKVAMQI AQADVTPEVG
501: GFSAASTSGK LREVDLNETP VTKNKRLRSR VDALAKTVEL GRRYFPNCSQ VLDKFLEDGL PDGLDAFQQQ SGTPDEQQVK KMRFCEVKED VRKAYSKDTA
601: DNSMFSALSS NSSSSAMK

Best Arabidopsis Sequence Match ( AT5G45110.1 )
(BLAST)

001: MATLTEPSSS LSFTSSHFSY GSIGSNHFSS SSASNPEVVS LTKLSSNLEQ LLSNSDCDYS DAEIIVDGVP VGVHRCILAA RSKFFQDLFK KEKKISKTEK
101: PKYQLREMLP YGAVAHEAFL YFLSYIYTGR LKPFPLEVST CVDPVCSHDC CRPAIDFVVQ LMYASSVLQV PELVSSFQRR LCNFVEKTLV ENVLPILMVA
201: FNCKLTQLLD QCIERVARSD LYRFCIEKEV PPEVAEKIKQ LRLISPQDEE TSPKISEKLL ERIGKILKAL DSDDVELVKL LLTESDITLD QANGLHYSVV
301: YSDPKVVAEI LALDMGDVNY RNSRGYTVLH FAAMRREPSI IISLIDKGAN ASEFTSDGRS AVNILRRLTN PKDYHTKTAK GRESSKARLC IDILEREIRK
401: NPMVLDTPMC SISMPEDLQM RLLYLEKRVG LAQLFFPTEA KVAMDIGNVE GTSEFTGLSP PSSGLTGNLS QVDLNETPHM QTQRLLTRMV ALMKTVETGR
501: RFFPYGSEVL DKYMAEYIDD DILDDFHFEK GSTHERRLKR MRYRELKDDV QKAYSKDKES KIARSCLSAS SSPSSSSIRD DLHNTT

Arabidopsis Description

NPR3NPR3 [Source:UniProtKB/TrEMBL;Acc:A0A178UGU4]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.