CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89967
CDY05010
CDY14061
CDY15245
CDY32466
CDY72572

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45110.1	CDX89967	AT1G02450.1	21798944
AT5G45110.1	CDY15245	AT1G02450.1	21798944
AT5G45110.1	CDY32466	AT1G02450.1	21798944
AT5G45110.1	CDY72572	AT1G02450.1	21798944
AT5G45110.1	CDY05010	AT5G06960.1	21798944
AT5G45110.1	CDY14061	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39410	Canola	plastid	98.52	97.8
CDY26398	Canola	plastid	86.16	83.1
AT5G45110.1	Thale cress	cytosol, plastid	86.16	79.69
CDX78955	Canola	plastid	74.35	68.54
CDX99350	Canola	plastid	74.35	68.54
CDY36698	Canola	cytosol	64.02	68.17
KRH36735	Soybean	cytosol, plastid	62.55	57.46
VIT_10s0042g01250.t01	Wine grape	cytosol, plastid	61.81	57.07
KRH11740	Soybean	plastid	61.07	56.1
PGSC0003DMT400054660	Potato	cytosol, plastid	56.09	52.32
Solyc02g069310.2.1	Tomato	cytosol, plastid	56.09	52.32
GSMUA_Achr5P02120_001	Banana	cytosol	55.9	51.88
GSMUA_Achr4P32060_001	Banana	cytosol, plastid	54.06	49.24
EES01524	Sorghum	plastid	51.84	45.25
TraesCS3B01G337700.1	Wheat	plastid	50.74	45.16
TraesCS3D01G302900.1	Wheat	cytosol, plastid	50.55	45.14
Zm00001d012660_P002	Maize	cytosol	51.48	44.93
TraesCS3A01G298800.1	Wheat	plastid	50.74	44.5
HORVU3Hr1G074640.4	Barley	cytosol, plastid	50.55	44.41
Os01t0767900-01	Rice	plastid	51.48	43.94
Zm00001d013581_P001	Maize	cytosol	16.05	43.28
EER91108	Sorghum	plastid	45.76	41.47
Os03t0667100-01	Rice	cytosol	45.02	41.43
Zm00001d034944_P004	Maize	cytosol	34.69	41.32
TraesCS4D01G017500.1	Wheat	cytosol	44.28	40.27
TraesCS4B01G018900.2	Wheat	cytosol, plastid	44.65	40.27
TraesCS4A01G294400.1	Wheat	cytosol, plastid	44.28	39.93
HORVU4Hr1G003040.1	Barley	cytosol, plastid	43.36	39.9
CDY25575	Canola	cytosol	37.27	35.44
CDY34413	Canola	cytosol	37.08	35.33
CDY50004	Canola	cytosol	36.53	33.22
CDX94371	Canola	cytosol	35.42	31.74
CDX89362	Canola	cytosol	35.42	31.74
CDX94376	Canola	cytosol	35.42	31.68
CDX89364	Canola	cytosol	35.42	31.58
CDY30971	Canola	cytosol	21.03	25.05
CDY23854	Canola	cytosol	22.14	24.95
CDX72067	Canola	cytosol	21.22	24.84
CDY06130	Canola	cytosol	21.03	24.68
CDY14765	Canola	cytosol, endoplasmic reticulum, plastid	21.77	24.23
CDY06929	Canola	cytosol, endoplasmic reticulum, plastid	21.77	24.23
CDX67678	Canola	cytosol, endoplasmic reticulum, plastid	20.3	23.81
CDX79940	Canola	cytosol	13.1	22.4
CDX76040	Canola	cytosol	11.99	22.34
CDY35774	Canola	cytosol	11.62	21.65
CDY33841	Canola	cytosol	3.69	20.2
CDY14314	Canola	nucleus	29.7	19.12

Protein Annotations

Gene3D:1.25.40.20	Gene3D:3.30.710.10	MapMan:35.1	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
InterPro:BTB/POZ_dom	EnsemblPlants:CDX82577	ProteinID:CDX82577	ProteinID:CDX82577.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00137753001	InterPro:IPR000210	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770
InterPro:NPR1/NIM1-like_C	InterPro:NPR_central_dom	PFAM:PF00651	PFAM:PF11900	PFAM:PF12313	PFscan:PS50088
PFscan:PS50097	PFscan:PS50297	PANTHER:PTHR24413	PANTHER:PTHR24413:SF124	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225
SUPFAM:SSF48403	SUPFAM:SSF54695	UniPathway:UPA00143	UniParc:UPI0004EEC137	SEG:seg	:

Description

BnaC07g02890D

Coordinates

chrLK031829:+:59815..62387

Molecular Weight (calculated)

60792.1 Da

IEP (calculated)

7.926

GRAVY (calculated)

-0.311

Length

542 amino acids

Sequence
(BLAST)

001: MATLTEPSSS LSFTSSHFSN VSVGSNHFSP SSASNLEVVS LSKLSSNLEQ LLSSNPDCDY TDAEIIVDGV PVGVHRCILS ARSKFFQELF KKDKKSSKIE
101: KPKYHLKEVL PYGAVGYEAF VYFLSYIYTG RLKPFPLEVS TCVDSVCAHD SCRPAIDLVV ELMYASSILQ VPELVSSFQR RLCNFVEKSL VENVLPILLV
201: AFNCKLTQLL DQCTERVARS DLYRFCIEKE VPLEVAEKIK QIRLKSPQEE EENSPKVSDK ILKALDSDDV ELVKLLLTEN SRGYTVLHLA AMRKEPSIII
301: SLLKKGANAS GFTCDGRSAV NICRRLTTPK DYHTKTAAKG REASKARLCI DLLEREVRRN PMVVESPMCS LSMPEDLQMR LLYLEKRVGL AQLFFPTEAK
401: VAMDIANVEG TSEFTGLPPP SNGLTGNLSQ VDLNETPHMQ TRRLLTRMEA LMKTVETGRR YFPYGSGVLD KYMEEYIDDD LQIEKGSPQE RRLKRMRYRE
501: LKDDVQKAYS KDKESKIARS CLSASSSPSS SSSLRDGLKN ST

Best Arabidopsis Sequence Match ( AT5G45110.1 )
(BLAST)

001: MATLTEPSSS LSFTSSHFSY GSIGSNHFSS SSASNPEVVS LTKLSSNLEQ LLSNSDCDYS DAEIIVDGVP VGVHRCILAA RSKFFQDLFK KEKKISKTEK
101: PKYQLREMLP YGAVAHEAFL YFLSYIYTGR LKPFPLEVST CVDPVCSHDC CRPAIDFVVQ LMYASSVLQV PELVSSFQRR LCNFVEKTLV ENVLPILMVA
201: FNCKLTQLLD QCIERVARSD LYRFCIEKEV PPEVAEKIKQ LRLISPQDEE TSPKISEKLL ERIGKILKAL DSDDVELVKL LLTESDITLD QANGLHYSVV
301: YSDPKVVAEI LALDMGDVNY RNSRGYTVLH FAAMRREPSI IISLIDKGAN ASEFTSDGRS AVNILRRLTN PKDYHTKTAK GRESSKARLC IDILEREIRK
401: NPMVLDTPMC SISMPEDLQM RLLYLEKRVG LAQLFFPTEA KVAMDIGNVE GTSEFTGLSP PSSGLTGNLS QVDLNETPHM QTQRLLTRMV ALMKTVETGR
501: RFFPYGSEVL DKYMAEYIDD DILDDFHFEK GSTHERRLKR MRYRELKDDV QKAYSKDKES KIARSCLSAS SSPSSSSIRD DLHNTT

Arabidopsis Description

NPR3NPR3 [Source:UniProtKB/TrEMBL;Acc:A0A178UGU4]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.