Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32466 | Canola | nucleus | 97.96 | 97.96 |
| Bra032601.1-P | Field mustard | nucleus | 97.28 | 97.28 |
| CDY15245 | Canola | nucleus | 61.9 | 70.54 |
| CDX89967 | Canola | nucleus | 68.03 | 70.42 |
| AT1G02450.1 | Thale cress | nucleus | 60.54 | 62.68 |
| CDX91833 | Canola | nucleus | 36.73 | 44.63 |
| CDX74398 | Canola | cytosol | 38.78 | 41.3 |
Protein Annotations
| MapMan:35.1 | GO:A0A078K3T6 | UniProt:A0A078K3T6 | EnsemblPlants:CDY72572 | ProteinID:CDY72572 | ProteinID:CDY72572.1 |
| ncoils:Coil | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009987 | GO:GO:0010112 | EnsemblPlantsGene:GSBRNA2T00030764001 |
| InterPro:NIMIN-1 | InterPro:NPR1/NH1-interacting | PFAM:PF15699 | PANTHER:PTHR33669 | PANTHER:PTHR33669:SF9 | UniParc:UPI0004EC72D8 |
| SEG:seg | : | : | : | : | : |
Description
BnaCnng78360DBnaCnng78360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078K3T6]
Coordinates
chrLK051912:+:1330..1834
Molecular Weight (calculated)
17336.4 Da
IEP (calculated)
4.626
GRAVY (calculated)
-1.195
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MYPKQLNLHD CPSNALKTMK NEKDQNVEIK EVNMIDKRER EEEEEEERKI DTFFKLIKTY QEARKRRREE FTGNSGEARK KWNGGERSCV VVPAFLPEDF
101: SECRMDLKPV MVVADHKEDD IKLKEEEDEE AKKEGQEETG LDLNLAL
101: SECRMDLKPV MVVADHKEDD IKLKEEEDEE AKKEGQEETG LDLNLAL
001: MYPKQFSLYN YSLETMSKDE NVESKETIRV DKRVREDEEE EEEKKIDTFF KLIKHYQEAR KRRREELAEN SGVVRRKSNG GERSGIVVPA FQPEDFSQCR
101: TGLKPPLMFV SDHKEENTKV EQEEDQTEER NEDKALDLNL AL
101: TGLKPPLMFV SDHKEENTKV EQEEDQTEER NEDKALDLNL AL
Arabidopsis Description
NIMIN-1NIMIN1 [Source:UniProtKB/TrEMBL;Acc:A0A178WC43]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.