Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000910.1-P | Field mustard | cytosol | 98.55 | 98.55 |
| CDX91833 | Canola | nucleus | 83.33 | 95.04 |
| AT4G01895.1 | Thale cress | nucleus | 53.62 | 52.86 |
| CDY15245 | Canola | nucleus | 40.58 | 43.41 |
| CDX89967 | Canola | nucleus | 42.03 | 40.85 |
| CDY32466 | Canola | nucleus | 41.3 | 38.78 |
| CDY72572 | Canola | nucleus | 41.3 | 38.78 |
Protein Annotations
| MapMan:35.2 | GO:A0A078CHD7 | EnsemblPlants:CDX74398 | ProteinID:CDX74398 | ProteinID:CDX74398.1 | ncoils:Coil |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009987 | GO:GO:0010112 | EnsemblPlantsGene:GSBRNA2T00112220001 | InterPro:NIMIN-1 |
| InterPro:NPR1/NH1-interacting | PFAM:PF15699 | PANTHER:PTHR33669 | PANTHER:PTHR33669:SF9 | UniParc:UPI0004EF47AC | SEG:seg |
Description
BnaA03g26490D
Coordinates
chrLK031800:+:2684201..2684617
Molecular Weight (calculated)
16201.8 Da
IEP (calculated)
4.207
GRAVY (calculated)
-1.090
Length
138 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLLGTPNHT ILFPFRMAIR SKDTEEENKR INEIDEPEED EDKKMEMFFN LIRNYQEARK RRRQELIEDS GETAPNPTKR SDNGEKSGIA PPVFHPEDFS
101: HCIDLNLEPI VSTEEEKQEE ETEEETREEN VLDLNLAL
101: HCIDLNLEPI VSTEEEKQEE ETEEETREEN VLDLNLAL
001: MNQEEEKTEN KRINEIDEDE EEELENKKMD MFFNLIKNYQ DAKKRRRQYL TQDSGDVASM PTKRSDYSIV PVFRAEDFSH CMDLNLKPSN SIISTKNQEE
101: EKQEEEEEED DEEEEDDDEG EEEVEKVMRK DNGLDLNLAL
101: EKQEEEEEED DEEEEDDDEG EEEVEKVMRK DNGLDLNLAL
Arabidopsis Description
At4g01895 [Source:UniProtKB/TrEMBL;Acc:Q9FNY8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.