CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY04768
CDY21400
CDY25575
CDY25761
CDY34413

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02450.1	CDY04768	AT1G22920.1	21798944
AT1G02450.1	CDY21400	AT1G22920.1	21798944
AT1G02450.1	CDY25761	AT1G22920.1	21798944
AT1G02450.1	CDY25575	AT1G64280.1	11442055
AT1G02450.1	CDY34413	AT1G64280.1	11442055
AT1G02450.1	CDY25575	AT1G64280.1	15749762
AT1G02450.1	CDY34413	AT1G64280.1	15749762
AT1G02450.1	CDY25575	AT1G64280.1	21798944
AT1G02450.1	CDY34413	AT1G64280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89967	Canola	nucleus	94.57	85.92
AT1G02450.1	Thale cress	nucleus	69.77	63.38
CDY72572	Canola	nucleus	70.54	61.9
CDY32466	Canola	nucleus	69.77	61.22
CDX91833	Canola	nucleus	41.09	43.8
CDX74398	Canola	cytosol	43.41	40.58

Protein Annotations

MapMan:35.1	GO:A0A078FLC8	UniProt:A0A078FLC8	EnsemblPlants:CDY15245	ProteinID:CDY15245	ProteinID:CDY15245.1
ncoils:Coil	GO:GO:0006139	GO:GO:0006355	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009605	GO:GO:0009607	GO:GO:0009987	GO:GO:0010112	EnsemblPlantsGene:GSBRNA2T00085441001
InterPro:NIMIN-1	InterPro:NPR1/NH1-interacting	PFAM:PF15699	PANTHER:PTHR33669	PANTHER:PTHR33669:SF9	UniParc:UPI0004EBA4FE
SEG:seg	:	:	:	:	:

Description

BnaC05g01240DBnaC05g01240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FLC8]

Coordinates

chrLK032052:-:640892..641281

Molecular Weight (calculated)

14877.0 Da

IEP (calculated)

4.306

GRAVY (calculated)

-1.377

Length

129 amino acids

Sequence
(BLAST)

001: MKNEKDQNVE TKETSRIGER EREDEDEEEK RIDTFFKLIK SYQEARKRRR EDLAENSGDV RKKTNVGEAS GAVVPAFQPE DFSQCGTDVK PLMAVSDHKE
101: GDVKVKEEEE EEAKEEEEEE KGLDLNLAL

Best Arabidopsis Sequence Match ( AT1G02450.1 )
(BLAST)

001: MYPKQFSLYN YSLETMSKDE NVESKETIRV DKRVREDEEE EEEKKIDTFF KLIKHYQEAR KRRREELAEN SGVVRRKSNG GERSGIVVPA FQPEDFSQCR
101: TGLKPPLMFV SDHKEENTKV EQEEDQTEER NEDKALDLNL AL

Arabidopsis Description

NIMIN-1NIMIN1 [Source:UniProtKB/TrEMBL;Acc:A0A178WC43]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.