CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74398	Canola	cytosol	95.04	83.33
AT4G01895.1	Thale cress	nucleus	63.64	55.0
CDY15245	Canola	nucleus	43.8	41.09
CDX89967	Canola	nucleus	44.63	38.03
CDY32466	Canola	nucleus	44.63	36.73
CDY72572	Canola	nucleus	44.63	36.73

Protein Annotations

MapMan:35.2	GO:A0A078DX77	EnsemblPlants:CDX91833	ProteinID:CDX91833	ProteinID:CDX91833.1	ncoils:Coil
GO:GO:0006139	GO:GO:0006355	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009605	GO:GO:0009607	GO:GO:0009987	GO:GO:0010112	EnsemblPlantsGene:GSBRNA2T00153440001	InterPro:NIMIN-1
InterPro:NPR1/NH1-interacting	PFAM:PF15699	PANTHER:PTHR33669	PANTHER:PTHR33669:SF9	UniParc:UPI0003C71DFB	SEG:seg

Description

BnaC03g31350D

Coordinates

chrLK031870:-:173885..174250

Molecular Weight (calculated)

14255.3 Da

IEP (calculated)

4.116

GRAVY (calculated)

-1.312

Length

121 amino acids

Sequence
(BLAST)

001: MAIRSKETEE ENKRINEIDE PEEDEDKKME MFFNLIRNYQ EARKRRRQEL IEDSGETAPN PTKRSDNGEK SGVAPPVFRA EDFTHCIDLN LEPIVSTEEE
101: KQEEEEEETR EENVLDLNLA L

Best Arabidopsis Sequence Match ( AT4G01895.1 )
(BLAST)

001: MNQEEEKTEN KRINEIDEDE EEELENKKMD MFFNLIKNYQ DAKKRRRQYL TQDSGDVASM PTKRSDYSIV PVFRAEDFSH CMDLNLKPSN SIISTKNQEE
101: EKQEEEEEED DEEEEDDDEG EEEVEKVMRK DNGLDLNLAL

Arabidopsis Description

At4g01895 [Source:UniProtKB/TrEMBL;Acc:Q9FNY8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.