Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX91833 | Canola | nucleus | 55.0 | 63.64 |
| Bra000910.1-P | Field mustard | cytosol | 54.29 | 55.07 |
| CDX74398 | Canola | cytosol | 52.86 | 53.62 |
| AT1G02450.1 | Thale cress | nucleus | 39.29 | 38.73 |
Protein Annotations
| MapMan:35.2 | EntrezGene:827073 | ProteinID:AEE82092.1 | EMBL:AJ252204 | ArrayExpress:AT4G01895 | EnsemblPlantsGene:AT4G01895 |
| RefSeq:AT4G01895 | TAIR:AT4G01895 | RefSeq:AT4G01895-TAIR-G | EnsemblPlants:AT4G01895.1 | TAIR:AT4G01895.1 | Unigene:At.69888 |
| EMBL:BT026068 | ncoils:Coil | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009987 | GO:GO:0010112 |
| InterPro:NIMIN-1 | InterPro:NPR1/NH1-interacting | RefSeq:NP_567218.2 | PFAM:PF15699 | PO:PO:0000293 | PANTHER:PTHR33669 |
| PANTHER:PTHR33669:SF9 | UniProt:Q9FNY8 | UniParc:UPI00000AB498 | SEG:seg | : | : |
Description
At4g01895 [Source:UniProtKB/TrEMBL;Acc:Q9FNY8]
Coordinates
chr4:+:819957..820379
Molecular Weight (calculated)
16663.8 Da
IEP (calculated)
3.966
GRAVY (calculated)
-1.504
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQEEEKTEN KRINEIDEDE EEELENKKMD MFFNLIKNYQ DAKKRRRQYL TQDSGDVASM PTKRSDYSIV PVFRAEDFSH CMDLNLKPSN SIISTKNQEE
101: EKQEEEEEED DEEEEDDDEG EEEVEKVMRK DNGLDLNLAL
101: EKQEEEEEED DEEEEDDDEG EEEVEKVMRK DNGLDLNLAL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.