Factsheet for Bra032601.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012351.1-P
Bra024548.1-P
Bra027690.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02450.1	Bra012351.1-P	AT1G22920.1	21798944
AT1G02450.1	Bra024548.1-P	AT1G22920.1	21798944
AT1G02450.1	Bra027690.1-P	AT1G64280.1	11442055
AT1G02450.1	Bra027690.1-P	AT1G64280.1	15749762
AT1G02450.1	Bra027690.1-P	AT1G64280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32466	Canola	nucleus	99.32	99.32
CDY72572	Canola	nucleus	97.28	97.28
AT1G02450.1	Thale cress	nucleus	60.54	62.68
Bra000910.1-P	Field mustard	cytosol	38.1	40.58

Protein Annotations

MapMan:35.1	EnsemblPlantsGene:Bra032601	EnsemblPlants:Bra032601.1	EnsemblPlants:Bra032601.1-P	ncoils:Coil	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009605	GO:GO:0009607	GO:GO:0009987
GO:GO:0010112	GO:GO:0042742	GO:GO:0045892	UniProt:M4EUW8	InterPro:NIMIN-1	InterPro:NPR1/NH1-interacting
PFAM:PF15699	PANTHER:PTHR33669	PANTHER:PTHR33669:SF9	UniParc:UPI000254308F	SEG:seg	:

Description

AT1G02450 (E=3e-026) NIMIN1, NIMIN-1 | NIMIN1 (NIM1-INTERACTING 1); protein binding

Coordinates

chrA09:+:36790058..36790501

Molecular Weight (calculated)

17355.5 Da

IEP (calculated)

4.699

GRAVY (calculated)

-1.203

Length

147 amino acids

Sequence
(BLAST)

001: MYPKQLNLHD CPSSAIKTMK NEKDQNVEIK EVNMIDKRER EEEEEEERKI DTFFKLIKTY QEARKRRREE FTGNSGEARK KWNGGERSCV VVPAFLPEDF
101: SECRMDLKPV MVVADRKEDD IKLKEEEDEE AKKEGQEEKG LDLNLAL

Best Arabidopsis Sequence Match ( AT1G02450.1 )
(BLAST)

001: MYPKQFSLYN YSLETMSKDE NVESKETIRV DKRVREDEEE EEEKKIDTFF KLIKHYQEAR KRRREELAEN SGVVRRKSNG GERSGIVVPA FQPEDFSQCR
101: TGLKPPLMFV SDHKEENTKV EQEEDQTEER NEDKALDLNL AL

Arabidopsis Description

NIMIN-1NIMIN1 [Source:UniProtKB/TrEMBL;Acc:A0A178WC43]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.