Factsheet for GSMUA_Achr4P32060_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr3P25020_001
GSMUA_Achr8P05800_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45110.1	GSMUA_Achr10P...	AT5G06960.1	21798944
AT5G45110.1	GSMUA_Achr11P...	AT5G06960.1	21798944
AT5G45110.1	GSMUA_Achr3P25020_001	AT5G06960.1	21798944
AT5G45110.1	GSMUA_Achr8P05800_001	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P02120_001	Banana	cytosol	86.05	87.67
VIT_10s0042g01250.t01	Wine grape	cytosol, plastid	66.55	67.46
EES01524	Sorghum	plastid	69.41	66.51
Zm00001d012660_P002	Maize	cytosol	68.74	65.86
KRH36735	Soybean	cytosol, plastid	63.53	64.07
KRH11740	Soybean	plastid	63.03	63.56
TraesCS3D01G302900.1	Wheat	cytosol, plastid	64.71	63.43
TraesCS3B01G337700.1	Wheat	plastid	64.54	63.05
Os01t0767900-01	Rice	plastid	67.06	62.83
HORVU3Hr1G074640.4	Barley	cytosol, plastid	64.71	62.4
PGSC0003DMT400054660	Potato	cytosol, plastid	60.84	62.31
TraesCS3A01G298800.1	Wheat	plastid	64.54	62.14
Solyc02g069310.2.1	Tomato	cytosol, plastid	60.17	61.62
KRH73603	Soybean	cytosol, plastid	57.82	58.31
KRH14520	Soybean	cytosol, plastid	56.64	57.12
Solyc07g044980.2.1	Tomato	nucleus	53.95	56.02
PGSC0003DMT400002412	Potato	cytosol	54.12	56.0
CDY26398	Canola	plastid	51.6	54.63
AT5G45110.1	Thale cress	cytosol, plastid	53.45	54.27
Bra021949.1-P	Field mustard	plastid	51.09	54.09
CDX82577	Canola	plastid	49.24	54.06
Os03t0667100-01	Rice	cytosol	53.28	53.82
CDX99350	Canola	plastid	53.11	53.74
CDY39410	Canola	plastid	49.24	53.66
Bra025093.1-P	Field mustard	plastid	49.24	53.66
Zm00001d034944_P004	Maize	cytosol	40.84	53.41
CDX78955	Canola	plastid	52.77	53.4
Bra013416.1-P	Field mustard	plastid	52.6	53.23
EER91108	Sorghum	plastid	51.93	51.67
AT4G19660.2	Thale cress	cytosol, plastid	52.1	51.58
Zm00001d013581_P001	Maize	cytosol	17.31	51.24
HORVU4Hr1G003040.1	Barley	cytosol, plastid	50.59	51.1
TraesCS4D01G017500.1	Wheat	cytosol	51.09	51.01
TraesCS4A01G294400.1	Wheat	cytosol, plastid	51.26	50.75
TraesCS4B01G018900.2	Wheat	cytosol, plastid	51.09	50.58
GSMUA_Achr7P09190_001	Banana	cytosol	42.86	44.35
GSMUA_Achr2P16670_001	Banana	cytosol	42.86	43.66
CDY36698	Canola	cytosol	36.64	42.83
GSMUA_Achr6P00950_001	Banana	nucleus	45.21	42.7
GSMUA_Achr8P05490_001	Banana	cytosol	38.82	39.76
GSMUA_Achr3P25880_001	Banana	cytosol	37.31	39.08
GSMUA_AchrUn_...	Banana	cytosol	35.97	37.22
GSMUA_Achr5P16220_001	Banana	cytosol	21.85	29.48
GSMUA_Achr8P22070_001	Banana	cytosol	20.0	28.67
GSMUA_Achr11P...	Banana	cytosol	20.67	28.47
GSMUA_Achr3P08710_001	Banana	cytosol	20.34	28.4
GSMUA_Achr5P08160_001	Banana	cytosol	20.34	28.34
GSMUA_AchrUn_...	Banana	cytosol	19.83	28.16
GSMUA_AchrUn_...	Banana	cytosol	19.16	25.45

Protein Annotations

Gene3D:1.25.40.20	MapMan:11.8.2.1	Gene3D:3.30.710.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr4G32060_001	EnsemblPlants:GSMUA_Achr4P32060_001
EnsemblPlants:GSMUA_Achr4T32060_001	InterPro:IPR000210	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	UniProt:M0STW8
InterPro:NPR1/NIM1-like_C	PFAM:PF00651	PFAM:PF12313	PFAM:PF12796	PFscan:PS50088	PFscan:PS50097
PFscan:PS50297	PANTHER:PTHR24413	PANTHER:PTHR24413:SF124	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SMART:SM00248
SUPFAM:SSF48403	SUPFAM:SSF54695	UniParc:UPI000295D920	SEG:seg	:	:

Description

Putative Regulatory protein NPR1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G32060_001]

Coordinates

chr4:-:28982816..28987433

Molecular Weight (calculated)

65821.5 Da

IEP (calculated)

6.834

GRAVY (calculated)

-0.282

Length

595 amino acids

Sequence
(BLAST)

001: MPNLTEPSSS ISFASSSYLS NGSSAYHVPG GTAPSPSPPP AAPEGGTNLE VLSLSKLSTN LERLLLDTEF DCTDAEIAVE GAPVGIHRCI LAARSRFFRD
101: LFSREGSGGN RQEGKPRYVM NELVPGGRIG REAFMVFLSY LYTGKLRAAP QDVSICVDRF CAHDACRPAI GFAVELLYAS SVFQIAELVS LLQRRLLNFV
201: DKAMVEDVIP ILQVASHSKL NQLLSHCVQR VARSDLDDIA LEKELPQEVA EEIRLLRRES QPKESTATVD PMLEKRIKRI HRALDSDDVE LVKLLLSESG
301: VTLDDAYALH YAAAYSDSKV VAELLDLGSA NVNLKNDRGY TALHLAAMRR EPAVIVSLLT KGASALETTA DGQNAVRICR RLTRAKDYFT RTEQGQESNK
401: NKICIDILER EIMRNPLAAE DSATSPLLAD DLHMKLLYLE NRVAFARLFF PAEAKLAMEI AHANTTSEFT GIAKSRSSSN LRDVDLNETP VVQNKRLRSR
501: VDALSKTVEL GRRYFPHCSQ VLDKFLEDDL PDVFYLQKGT PDEQKVKKLR FCELKEDVRK AFSKDKAGSL LSGLSSSSSS SSPKSEEKHH TFARN

Best Arabidopsis Sequence Match ( AT5G45110.1 )
(BLAST)

001: MATLTEPSSS LSFTSSHFSY GSIGSNHFSS SSASNPEVVS LTKLSSNLEQ LLSNSDCDYS DAEIIVDGVP VGVHRCILAA RSKFFQDLFK KEKKISKTEK
101: PKYQLREMLP YGAVAHEAFL YFLSYIYTGR LKPFPLEVST CVDPVCSHDC CRPAIDFVVQ LMYASSVLQV PELVSSFQRR LCNFVEKTLV ENVLPILMVA
201: FNCKLTQLLD QCIERVARSD LYRFCIEKEV PPEVAEKIKQ LRLISPQDEE TSPKISEKLL ERIGKILKAL DSDDVELVKL LLTESDITLD QANGLHYSVV
301: YSDPKVVAEI LALDMGDVNY RNSRGYTVLH FAAMRREPSI IISLIDKGAN ASEFTSDGRS AVNILRRLTN PKDYHTKTAK GRESSKARLC IDILEREIRK
401: NPMVLDTPMC SISMPEDLQM RLLYLEKRVG LAQLFFPTEA KVAMDIGNVE GTSEFTGLSP PSSGLTGNLS QVDLNETPHM QTQRLLTRMV ALMKTVETGR
501: RFFPYGSEVL DKYMAEYIDD DILDDFHFEK GSTHERRLKR MRYRELKDDV QKAYSKDKES KIARSCLSAS SSPSSSSIRD DLHNTT

Arabidopsis Description

NPR3NPR3 [Source:UniProtKB/TrEMBL;Acc:A0A178UGU4]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.