Factsheet for HORVU4Hr1G003040.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
extracellular 1
cytosol 2
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G032230.4
HORVU1Hr1G068220.1
HORVU2Hr1G016580.5
HORVU3Hr1G042790.4
HORVU3Hr1G042830.1
HORVU3Hr1G079010.5
HORVU4Hr1G052330.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45110.1	HORVU0Hr1G032230.4	AT5G06960.1	21798944
AT5G45110.1	HORVU1Hr1G068220.1	AT5G06960.1	21798944
AT5G45110.1	HORVU2Hr1G016580.5	AT5G06960.1	21798944
AT5G45110.1	HORVU3Hr1G042790.4	AT5G06960.1	21798944
AT5G45110.1	HORVU3Hr1G042830.1	AT5G06960.1	21798944
AT5G45110.1	HORVU3Hr1G079010.5	AT5G06960.1	21798944
AT5G45110.1	HORVU4Hr1G052330.3	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G294400.1	Wheat	cytosol, plastid	94.91	93.01
TraesCS4B01G018900.2	Wheat	cytosol, plastid	94.57	92.68
TraesCS4D01G017500.1	Wheat	cytosol	93.72	92.62
Zm00001d013581_P001	Maize	cytosol	26.15	76.62
Os03t0667100-01	Rice	cytosol	76.06	76.06
EER91108	Sorghum	plastid	74.7	73.58
Zm00001d034944_P004	Maize	cytosol	54.84	70.99
GSMUA_Achr5P02120_001	Banana	cytosol	50.25	50.68
GSMUA_Achr4P32060_001	Banana	cytosol, plastid	51.1	50.59
VIT_10s0042g01250.t01	Wine grape	cytosol, plastid	49.07	49.23
KRH36735	Soybean	cytosol, plastid	48.22	48.14
KRH11740	Soybean	plastid	47.71	47.63
HORVU3Hr1G074640.4	Barley	cytosol, plastid	49.75	47.49
Solyc02g069310.2.1	Tomato	cytosol, plastid	44.82	45.44
PGSC0003DMT400054660	Potato	cytosol, plastid	44.48	45.09
PGSC0003DMT400002412	Potato	cytosol	43.12	44.17
CDY26398	Canola	plastid	41.94	43.95
Solyc07g044980.2.1	Tomato	nucleus	42.44	43.63
Bra021949.1-P	Field mustard	plastid	41.6	43.59
KRH73603	Soybean	cytosol, plastid	43.63	43.56
KRH14520	Soybean	cytosol, plastid	43.46	43.39
Bra013416.1-P	Field mustard	plastid	43.29	43.37
CDX82577	Canola	plastid	39.9	43.36
AT5G45110.1	Thale cress	cytosol, plastid	43.12	43.34
CDY39410	Canola	plastid	40.07	43.22
Bra025093.1-P	Field mustard	plastid	40.07	43.22
CDX78955	Canola	plastid	42.95	43.03
CDX99350	Canola	plastid	42.44	42.52
AT4G19660.2	Thale cress	cytosol, plastid	42.44	41.6
HORVU3Hr1G019230.6	Barley	cytosol	36.16	35.62
CDY36698	Canola	cytosol	29.2	33.79
HORVU3Hr1G106880.5	Barley	cytosol	19.52	22.42

Protein Annotations

Gene3D:1.25.40.20	MapMan:11.8.2.1	Gene3D:3.30.710.10	EMBL:AK359061	EMBL:AK366647	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:BTB/POZ_dom	UniProt:F2D5A1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006950	GO:GO:0008150	GO:GO:0009605	GO:GO:0009607	GO:GO:0042742
EnsemblPlantsGene:HORVU4Hr1G003040	EnsemblPlants:HORVU4Hr1G003040.1	InterPro:IPR000210	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770
InterPro:NPR1/NIM1-like_C	InterPro:NPR_central_dom	PFAM:PF00651	PFAM:PF11900	PFAM:PF12313	PFAM:PF13606
PFscan:PS50088	PFscan:PS50097	PFscan:PS50297	PANTHER:PTHR24413	PANTHER:PTHR24413:SF114	InterPro:SKP1/BTB/POZ_sf
SMART:SM00225	SUPFAM:SSF48403	SUPFAM:SSF54695	UniParc:UPI0002005B9D	SEG:seg	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D5A1]

Coordinates

chrchr4H:-:6021457..6025575

Molecular Weight (calculated)

65504.1 Da

IEP (calculated)

6.110

GRAVY (calculated)

-0.216

Length

589 amino acids

Sequence
(BLAST)

001: METSTVTYSS SSPPPSSSPQ QQQAEQAADL DAVSLGRLSA NLERLLDPAF LGCADADVVL AAGDAVVGVH RCILAARSNF FLDHFSSLAA DDKERPRLEL
101: ADLVPGGRHI GRDALVAVLG YLYTGRLRPP PRDAAVCVDE LCPHEACRPA IDFVVESTYA AAGFQISELV SLFQRRLSDF VNIALVEDIV AIVHVASTCQ
201: LHELLSQCIQ RVAGSSVDSR YLEKELPDEA FAKVKEFRRY SLHDDSDEFI LDPEHARKVR NIHKALDCDD VDLVGLLLQE SGITLDDAFA IHYAAAYCEP
301: KVLAGILKLV PAGDCVNVNL KNDSGYTPLH LACMRREPQI LLSLIEKGAS VVERTRDGRD ALTICKRLTT EKDCNKKFEK CKERSKAYLC IDILEQEIKR
401: KSFIFEELLS AEVSVATPLL VDNFHMRLIN LENRVAFARI FFPSEAKLVM RIAQADSTEE FAGLTSANFN KLKEVDLNET PTMQNKRLRE RLDALTKTVE
501: LGRKYFPHCS DVLDKFLIEE STDLHFLESG TAEDQCTRRS RFSELKEDVR KAFSKDKAVA AIASSTSSYS PRGDGKVNRH GHKKARLSR

Best Arabidopsis Sequence Match ( AT5G45110.1 )
(BLAST)

001: MATLTEPSSS LSFTSSHFSY GSIGSNHFSS SSASNPEVVS LTKLSSNLEQ LLSNSDCDYS DAEIIVDGVP VGVHRCILAA RSKFFQDLFK KEKKISKTEK
101: PKYQLREMLP YGAVAHEAFL YFLSYIYTGR LKPFPLEVST CVDPVCSHDC CRPAIDFVVQ LMYASSVLQV PELVSSFQRR LCNFVEKTLV ENVLPILMVA
201: FNCKLTQLLD QCIERVARSD LYRFCIEKEV PPEVAEKIKQ LRLISPQDEE TSPKISEKLL ERIGKILKAL DSDDVELVKL LLTESDITLD QANGLHYSVV
301: YSDPKVVAEI LALDMGDVNY RNSRGYTVLH FAAMRREPSI IISLIDKGAN ASEFTSDGRS AVNILRRLTN PKDYHTKTAK GRESSKARLC IDILEREIRK
401: NPMVLDTPMC SISMPEDLQM RLLYLEKRVG LAQLFFPTEA KVAMDIGNVE GTSEFTGLSP PSSGLTGNLS QVDLNETPHM QTQRLLTRMV ALMKTVETGR
501: RFFPYGSEVL DKYMAEYIDD DILDDFHFEK GSTHERRLKR MRYRELKDDV QKAYSKDKES KIARSCLSAS SSPSSSSIRD DLHNTT

Arabidopsis Description

NPR3NPR3 [Source:UniProtKB/TrEMBL;Acc:A0A178UGU4]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.