Factsheet for PGSC0003DMT400002412

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g044980.2.1	Tomato	nucleus	96.52	96.86
KRH14520	Soybean	cytosol, plastid	58.43	56.95
KRH73603	Soybean	cytosol, plastid	58.26	56.78
GSMUA_Achr5P02120_001	Banana	cytosol	55.3	54.45
PGSC0003DMT400054660	Potato	cytosol, plastid	54.96	54.39
GSMUA_Achr4P32060_001	Banana	cytosol, plastid	56.0	54.12
EES01524	Sorghum	plastid	52.35	48.47
Zm00001d012660_P002	Maize	cytosol	52.0	48.15
TraesCS3D01G302900.1	Wheat	cytosol, plastid	50.61	47.94
HORVU3Hr1G074640.4	Barley	cytosol, plastid	51.13	47.65
TraesCS3B01G337700.1	Wheat	plastid	50.43	47.62
TraesCS3A01G298800.1	Wheat	plastid	50.78	47.25
Os01t0767900-01	Rice	plastid	52.17	47.24
Os03t0667100-01	Rice	cytosol	47.83	46.69
Zm00001d034944_P004	Maize	cytosol	35.83	45.27
EER91108	Sorghum	plastid	46.26	44.48
HORVU4Hr1G003040.1	Barley	cytosol, plastid	44.17	43.12
TraesCS4A01G294400.1	Wheat	cytosol, plastid	44.7	42.76
TraesCS4D01G017500.1	Wheat	cytosol	44.17	42.62
TraesCS4B01G018900.2	Wheat	cytosol, plastid	44.35	42.43
Zm00001d013581_P001	Maize	cytosol	14.78	42.29
PGSC0003DMT400027591	Potato	cytosol	22.43	27.98
PGSC0003DMT400021076	Potato	cytosol	22.43	26.33
PGSC0003DMT400076710	Potato	cytosol	22.09	26.08

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:102601928	MapMan:11.8.2.1	Gene3D:3.30.710.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000210
InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	UniProt:M0ZK32	InterPro:NPR1/NIM1-like_C	InterPro:NPR_central_dom
PFAM:PF00651	PFAM:PF11900	PFAM:PF12313	PFAM:PF12796	EnsemblPlantsGene:PGSC0003DMG401000923	PGSC:PGSC0003DMG401000923
EnsemblPlants:PGSC0003DMT400002412	PFscan:PS50088	PFscan:PS50097	PFscan:PS50297	PANTHER:PTHR24413	PANTHER:PTHR24413:SF78
InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF54695	UniParc:UPI000296BFEF
RefSeq:XP_006366625.1	SEG:seg	:	:	:	:

Description

NIM1 2 [Source:PGSC_GENE;Acc:PGSC0003DMG401000923]

Coordinates

chr7:-:42736015..42742724

Molecular Weight (calculated)

64583.3 Da

IEP (calculated)

5.722

GRAVY (calculated)

-0.345

Length

575 amino acids

Sequence
(BLAST)

001: MESGHESFAA SSNVSNECSS PQEPGPSVDH LSNLCGSLEK LLLNPEYNYS DAEIVVEGID VGVNRCILAA RSQFFHEKFK EQNENSLKNE KPKYLLKDLV
101: RVASIGYEVF MVLLNYLYTG KIKSSPSEVS SCVDNACAHD ACRPAINYAV ELMYASSTFQ IKELVMVVER YLDNFVDKAT PEDVIPILLV AFHCKSNQLL
201: EHCIQRVARS DLDNATLEKE LPHEVLTDIK SRRLKSRQGT EQESLEEDSL SEKRIRRILK ALESDDIELL TLLLEESNVT LNDACALHYA AAYCNSKVVN
301: EVLELGLGAD VNLQNSRGYN VLHVAARRKE PSIIMGLLAK GASVLDTTRD GHTALSICRR LTRLKDYNDP PEQGKVTNKD RLCIDVLERE MIRNPMIGSM
401: SSSSLVLADE LLMRLLLFEN RVALARMLFP QEAMLAMEIA HADSTAEFTG LSATNGLCRN PRGVDLNKLP SEQVKRLQER LVALLRTVET GRRFFPNCSE
501: VLDRLLEDDK LDSLMLESGT PEEQRSKKMR YTELKDEVME AFKKDKAEKN WAGFSTSSSS SCSPKTNVSH KFRKK

Best Arabidopsis Sequence Match ( AT5G45110.1 )
(BLAST)

001: MATLTEPSSS LSFTSSHFSY GSIGSNHFSS SSASNPEVVS LTKLSSNLEQ LLSNSDCDYS DAEIIVDGVP VGVHRCILAA RSKFFQDLFK KEKKISKTEK
101: PKYQLREMLP YGAVAHEAFL YFLSYIYTGR LKPFPLEVST CVDPVCSHDC CRPAIDFVVQ LMYASSVLQV PELVSSFQRR LCNFVEKTLV ENVLPILMVA
201: FNCKLTQLLD QCIERVARSD LYRFCIEKEV PPEVAEKIKQ LRLISPQDEE TSPKISEKLL ERIGKILKAL DSDDVELVKL LLTESDITLD QANGLHYSVV
301: YSDPKVVAEI LALDMGDVNY RNSRGYTVLH FAAMRREPSI IISLIDKGAN ASEFTSDGRS AVNILRRLTN PKDYHTKTAK GRESSKARLC IDILEREIRK
401: NPMVLDTPMC SISMPEDLQM RLLYLEKRVG LAQLFFPTEA KVAMDIGNVE GTSEFTGLSP PSSGLTGNLS QVDLNETPHM QTQRLLTRMV ALMKTVETGR
501: RFFPYGSEVL DKYMAEYIDD DILDDFHFEK GSTHERRLKR MRYRELKDDV QKAYSKDKES KIARSCLSAS SSPSSSSIRD DLHNTT

Arabidopsis Description

NPR3NPR3 [Source:UniProtKB/TrEMBL;Acc:A0A178UGU4]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.