Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400009142 | |
| PGSC0003DMT400009146 | |
| PGSC0003DMT400092162 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G41370.1 | PGSC0003DMT400009142 | AT3G51180.1 | 21798944 |
| AT2G41370.1 | PGSC0003DMT400009146 | AT3G51180.1 | 21798944 |
| AT2G41370.1 | PGSC0003DMT400092162 | AT3G51180.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g079750.1.1 | Tomato | cytosol | 94.66 | 94.47 |
| PGSC0003DMT400027591 | Potato | cytosol | 77.0 | 81.34 |
| CDX79940 | Canola | cytosol | 50.72 | 77.92 |
| Bra004617.1-P | Field mustard | cytosol | 50.51 | 77.6 |
| PGSC0003DMT400021076 | Potato | cytosol | 77.82 | 77.35 |
| VIT_08s0007g05740.t01 | Wine grape | cytosol | 77.82 | 77.35 |
| AT2G41370.1 | Thale cress | cytosol | 77.0 | 76.37 |
| CDY23854 | Canola | cytosol | 75.36 | 76.3 |
| CDY06929 | Canola | cytosol, endoplasmic reticulum, plastid | 76.18 | 76.18 |
| CDY14765 | Canola | cytosol, endoplasmic reticulum, plastid | 75.98 | 75.98 |
| Bra016938.1-P | Field mustard | cytosol | 75.36 | 75.36 |
| KRH66789 | Soybean | cytosol | 74.95 | 74.95 |
| KRH72058 | Soybean | cytosol | 72.48 | 74.16 |
| AT3G57130.1 | Thale cress | cytosol | 71.05 | 74.09 |
| GSMUA_Achr5P16220_001 | Banana | cytosol | 66.12 | 73.02 |
| Bra007306.1-P | Field mustard | cytosol | 68.58 | 72.29 |
| CDY06130 | Canola | cytosol | 68.38 | 72.08 |
| Bra003268.1-P | Field mustard | cytosol, endoplasmic reticulum, plastid | 68.17 | 71.86 |
| CDX72067 | Canola | cytosol | 67.97 | 71.49 |
| CDX67678 | Canola | cytosol, endoplasmic reticulum, plastid | 67.56 | 71.21 |
| CDX76040 | Canola | cytosol | 42.51 | 71.13 |
| Solyc05g018160.1.1 | Tomato | cytosol | 40.86 | 71.07 |
| Bra014645.1-P | Field mustard | cytosol | 42.3 | 70.79 |
| CDY30971 | Canola | cytosol | 66.12 | 70.77 |
| CDY35774 | Canola | cytosol | 41.89 | 70.1 |
| GSMUA_Achr5P08160_001 | Banana | cytosol | 61.4 | 70.02 |
| GSMUA_Achr11P... | Banana | cytosol | 62.01 | 69.91 |
| GSMUA_AchrUn_... | Banana | cytosol | 59.96 | 69.69 |
| Zm00001d011878_P001 | Maize | cytosol | 69.82 | 69.39 |
| GSMUA_Achr3P08710_001 | Banana | cytosol | 60.57 | 69.25 |
| Os01t0948900-01 | Rice | cytosol | 47.02 | 67.95 |
| GSMUA_Achr8P22070_001 | Banana | cytosol | 57.7 | 67.71 |
| OQU88196 | Sorghum | cytosol | 70.02 | 67.26 |
| Zm00001d042111_P001 | Maize | cytosol | 69.82 | 66.93 |
| TraesCS3A01G489000.1 | Wheat | cytosol | 70.23 | 66.54 |
| TraesCS3D01G484100.1 | Wheat | cytosol | 69.61 | 66.34 |
| HORVU3Hr1G106880.5 | Barley | cytosol | 69.82 | 66.28 |
| TraesCS3B01G537400.1 | Wheat | cytosol | 69.82 | 66.15 |
| GSMUA_AchrUn_... | Banana | cytosol | 56.47 | 61.38 |
| Zm00001d052468_P002 | Maize | cytosol | 57.08 | 59.02 |
| EES16520 | Sorghum | cytosol | 58.11 | 58.96 |
| Zm00001d023246_P001 | Maize | cytosol | 57.29 | 58.74 |
| Zm00001d004966_P001 | Maize | cytosol | 56.26 | 57.93 |
| Os11t0141900-00 | Rice | cytosol | 58.52 | 57.69 |
| EES09234 | Sorghum | cytosol | 57.08 | 57.44 |
| TraesCS5A01G134700.2 | Wheat | cytosol | 58.11 | 57.4 |
| TraesCS5B01G133700.1 | Wheat | cytosol | 58.11 | 57.4 |
| TraesCS5D01G139600.1 | Wheat | cytosol | 58.11 | 57.4 |
| Os12t0138500-01 | Rice | cytosol | 37.37 | 56.0 |
| CDY33841 | Canola | cytosol | 9.45 | 46.46 |
| PGSC0003DMT400054660 | Potato | cytosol, plastid | 27.72 | 23.24 |
| PGSC0003DMT400002412 | Potato | cytosol | 26.08 | 22.09 |
Protein Annotations
| Gene3D:1.25.40.20 | EntrezGene:102603071 | MapMan:15.5.4.7.2 | Gene3D:3.30.710.10 | InterPro:Ankyrin_rpt | InterPro:Ankyrin_rpt-contain_dom |
| InterPro:Ankyrin_rpt-contain_sf | InterPro:BTB/POZ_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR000210 |
| InterPro:IPR002110 | InterPro:IPR020683 | InterPro:IPR036770 | UniProt:M1CX96 | InterPro:NPR_central_dom | PFAM:PF00651 |
| PFAM:PF11900 | PFAM:PF12796 | EnsemblPlantsGene:PGSC0003DMG400029834 | PGSC:PGSC0003DMG400029834 | EnsemblPlants:PGSC0003DMT400076710 | PFscan:PS50088 |
| PFscan:PS50097 | PFscan:PS50297 | PANTHER:PTHR24413 | PANTHER:PTHR24413:SF116 | InterPro:SKP1/BTB/POZ_sf | SMART:SM00225 |
| SMART:SM00248 | SUPFAM:SSF48403 | SUPFAM:SSF54695 | UniParc:UPI0002961FD5 | RefSeq:XP_006351282.1 | SEG:seg |
Description
Aberrant large forked product [Source:PGSC_GENE;Acc:PGSC0003DMG400029834]
Coordinates
chr10:+:58055935..58058225
Molecular Weight (calculated)
53418.9 Da
IEP (calculated)
6.614
GRAVY (calculated)
-0.199
Length
487 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSTLEDSLK TLSLDYLNLL INGQAFSDVT FSVEGRLVHA HRCILAARSL VFRKFFCGPE SPGGGSDPSA GFGSPRTSTT SSSQVVIPVN SVGYEVFLLM
101: LQFLYSGQVS IVPQKHEPRP NCGERSCWHT HCTSAVDLAL DILSAARSFG VEQLALLTQK QLTGMVEKTS IEDVMKVLIA SRKQDMPQLW TTCSHLVAKS
201: GLPPEILAKH LPIDVVAKIE EIRLKTSLAR RSLISHHHHH QHDLSTASEL EDQKIRRMRR ALDSSDVELV KLMVMGEGLN LDESIALHYA VENCSREVVK
301: TLLELGAANV NHPAGPAGKT PLHIASEMVS PDMVAVLLDH HADPNVRTMD GITPLDILRT LTSDFLFKGA VPGLNHIEPN KLRLCLELVQ SAAMVISREE
401: ENTNNVPSST AIFQPINNED HGSSATNVGS NNLNLDSRMV YLNLGAGTSI SQQMGCNRMT NEDDHANSHN KQNRHSGFDP SSMYRPY
101: LQFLYSGQVS IVPQKHEPRP NCGERSCWHT HCTSAVDLAL DILSAARSFG VEQLALLTQK QLTGMVEKTS IEDVMKVLIA SRKQDMPQLW TTCSHLVAKS
201: GLPPEILAKH LPIDVVAKIE EIRLKTSLAR RSLISHHHHH QHDLSTASEL EDQKIRRMRR ALDSSDVELV KLMVMGEGLN LDESIALHYA VENCSREVVK
301: TLLELGAANV NHPAGPAGKT PLHIASEMVS PDMVAVLLDH HADPNVRTMD GITPLDILRT LTSDFLFKGA VPGLNHIEPN KLRLCLELVQ SAAMVISREE
401: ENTNNVPSST AIFQPINNED HGSSATNVGS NNLNLDSRMV YLNLGAGTSI SQQMGCNRMT NEDDHANSHN KQNRHSGFDP SSMYRPY
001: MSNLEESLRS LSLDFLNLLI NGQAFSDVTF SVEGRLVHAH RCILAARSLF FRKFFCGTDS PQPVTGIDPT QHGSVPASPT RGSTAPAGII PVNSVGYEVF
101: LLLLQFLYSG QVSIVPQKHE PRPNCGERGC WHTHCSAAVD LALDTLAASR YFGVEQLALL TQKQLASMVE KASIEDVMKV LIASRKQDMH QLWTTCSHLV
201: AKSGLPPEIL AKHLPIDVVT KIEELRLKSS IARRSLMPHN HHHDLSVAQD LEDQKIRRMR RALDSSDVEL VKLMVMGEGL NLDESLALHY AVESCSREVV
301: KALLELGAAD VNYPAGPAGK TPLHIAAEMV SPDMVAVLLD HHADPNVRTV GGITPLDILR TLTSDFLFKG AVPGLTHIEP NKLRLCLELV QSAAMVISRE
401: EGNNSNNQNN DNNTGIYPHM NEEHNSGSSG GSNNNLDSRL VYLNLGAGTG QMGPGRDQGD DHNSQREGMS RHHHHHQDPS TMYHHHHQHH F
101: LLLLQFLYSG QVSIVPQKHE PRPNCGERGC WHTHCSAAVD LALDTLAASR YFGVEQLALL TQKQLASMVE KASIEDVMKV LIASRKQDMH QLWTTCSHLV
201: AKSGLPPEIL AKHLPIDVVT KIEELRLKSS IARRSLMPHN HHHDLSVAQD LEDQKIRRMR RALDSSDVEL VKLMVMGEGL NLDESLALHY AVESCSREVV
301: KALLELGAAD VNYPAGPAGK TPLHIAAEMV SPDMVAVLLD HHADPNVRTV GGITPLDILR TLTSDFLFKG AVPGLTHIEP NKLRLCLELV QSAAMVISRE
401: EGNNSNNQNN DNNTGIYPHM NEEHNSGSSG GSNNNLDSRL VYLNLGAGTG QMGPGRDQGD DHNSQREGMS RHHHHHQDPS TMYHHHHQHH F
Arabidopsis Description
NPR5Regulatory protein NPR5 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVC2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.