Factsheet for GSMUA_AchrUn_randomP13330_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P19920_001
GSMUA_Achr3P11230_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41370.1	GSMUA_Achr1P19920_001	AT3G51180.1	21798944
AT2G41370.1	GSMUA_Achr3P11230_001	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P08710_001	Banana	cytosol	92.36	90.85
GSMUA_Achr5P08160_001	Banana	cytosol	91.17	89.46
GSMUA_Achr8P22070_001	Banana	cytosol	82.1	82.89
GSMUA_Achr11P...	Banana	cytosol	82.82	80.32
CDX79940	Canola	cytosol	54.65	72.24
Bra004617.1-P	Field mustard	cytosol	54.42	71.92
Bra014645.1-P	Field mustard	cytosol	47.97	69.07
GSMUA_AchrUn_...	Banana	cytosol	73.75	68.97
CDX76040	Canola	cytosol	47.73	68.73
CDY35774	Canola	cytosol	47.02	67.7
GSMUA_Achr5P16220_001	Banana	cytosol	70.64	67.12
KRH66789	Soybean	cytosol	74.94	64.48
VIT_08s0007g05740.t01	Wine grape	cytosol	74.46	63.67
AT3G57130.1	Thale cress	cytosol	70.88	63.6
AT2G41370.1	Thale cress	cytosol	74.22	63.34
PGSC0003DMT400027591	Potato	cytosol	69.45	63.12
CDY14765	Canola	cytosol, endoplasmic reticulum, plastid	73.27	63.04
CDY06929	Canola	cytosol, endoplasmic reticulum, plastid	73.27	63.04
CDY23854	Canola	cytosol	72.08	62.79
KRH72058	Soybean	cytosol	70.88	62.4
Solyc04g040220.2.1	Tomato	cytosol	69.21	62.23
Bra016938.1-P	Field mustard	cytosol	72.31	62.22
CDY06130	Canola	cytosol	68.26	61.9
Bra007306.1-P	Field mustard	cytosol	68.26	61.9
CDX72067	Canola	cytosol	68.26	61.77
Os12t0138500-01	Rice	cytosol	47.02	60.62
Bra003268.1-P	Field mustard	cytosol, endoplasmic reticulum, plastid	66.83	60.61
CDX67678	Canola	cytosol, endoplasmic reticulum, plastid	66.59	60.39
Solyc10g079750.1.1	Tomato	cytosol	69.93	60.04
PGSC0003DMT400076710	Potato	cytosol	69.69	59.96
CDY30971	Canola	cytosol	64.44	59.34
PGSC0003DMT400021076	Potato	cytosol	69.21	59.18
Solyc10g079460.1.1	Tomato	cytosol	68.97	58.5
Zm00001d023246_P001	Maize	cytosol	64.2	56.63
Zm00001d052468_P002	Maize	cytosol	63.25	56.26
EES16520	Sorghum	cytosol	64.44	56.25
EES09234	Sorghum	cytosol	63.72	55.17
TraesCS5A01G134700.2	Wheat	cytosol	63.96	54.36
TraesCS5B01G133700.1	Wheat	cytosol	63.96	54.36
TraesCS5D01G139600.1	Wheat	cytosol	63.96	54.36
Zm00001d004966_P001	Maize	cytosol	60.62	53.7
Os11t0141900-00	Rice	cytosol	63.01	53.44
Solyc05g018160.1.1	Tomato	cytosol	35.56	53.21
CDY33841	Canola	cytosol	10.5	44.44
GSMUA_Achr5P02120_001	Banana	cytosol	28.4	20.38
GSMUA_Achr4P32060_001	Banana	cytosol, plastid	28.16	19.83
GSMUA_Achr8P05490_001	Banana	cytosol	26.97	19.45
GSMUA_Achr3P25880_001	Banana	cytosol	26.25	19.37
GSMUA_Achr2P16670_001	Banana	cytosol	26.73	19.18
GSMUA_Achr6P00950_001	Banana	nucleus	27.21	18.1
GSMUA_Achr7P09190_001	Banana	cytosol	24.82	18.09
GSMUA_AchrUn_...	Banana	cytosol	24.82	18.09

Protein Annotations

Gene3D:1.25.40.20	MapMan:15.5.4.7.2	Gene3D:3.30.710.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_AchrUn_randomG13330_001	EnsemblPlants:GSMUA_AchrUn_randomP13330_001	EnsemblPlants:GSMUA_AchrUn_randomT13330_001
InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	UniProt:M0U8U2	InterPro:NPR_central_dom	PFAM:PF11900
PFAM:PF12796	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR24413	PANTHER:PTHR24413:SF116	SMART:SM00248
SUPFAM:SSF48403	UniParc:UPI0002954771	SEG:seg	:	:	:

Description

BTBA3 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG13330_001]

Coordinates

chrchrUn_random:-:64100303..64102242

Molecular Weight (calculated)

44988.1 Da

IEP (calculated)

6.301

GRAVY (calculated)

-0.087

Length

419 amino acids

Sequence
(BLAST)

001: MEETLKSLSL DYLNLLINGQ AFSDVTFSVE GRLFLYSGQV SVVPQKHEPR PNCGDRGCWH THCAAAVDLA LDTLAAARSF GVKQLEQITE KQLASMVEKA
101: SIEDVMKVLM ASRQQDMQQL WATCSHLVAK SGLPAEVLAK HLPIDVVARI EELRLKSSFA RRPSFVARHP HQIDVAGPAA DLEDHHHKIR RMRRALDSSD
201: VELVKLMVMG EGLNLDDALA LHYAVENCTR EVVKALLELG AADVNCPAGP TGKTPLHIAA EMVSPDMVAV LLDHHADPNV RTVDGVTPLE ILRTLTSDFL
301: FKGAVPGLSH IEPNKLRLCL ELVQSAALVM SREEANSGGG NGGAGNSPRA AIYPRMNPEI AACSLSLDSR MVYLNLGMAA QFGSKMNDGG GDESLSSRPQ
401: GGGGGGVGPS SIYPSHGFP

Best Arabidopsis Sequence Match ( AT2G41370.1 )
(BLAST)

001: MSNLEESLRS LSLDFLNLLI NGQAFSDVTF SVEGRLVHAH RCILAARSLF FRKFFCGTDS PQPVTGIDPT QHGSVPASPT RGSTAPAGII PVNSVGYEVF
101: LLLLQFLYSG QVSIVPQKHE PRPNCGERGC WHTHCSAAVD LALDTLAASR YFGVEQLALL TQKQLASMVE KASIEDVMKV LIASRKQDMH QLWTTCSHLV
201: AKSGLPPEIL AKHLPIDVVT KIEELRLKSS IARRSLMPHN HHHDLSVAQD LEDQKIRRMR RALDSSDVEL VKLMVMGEGL NLDESLALHY AVESCSREVV
301: KALLELGAAD VNYPAGPAGK TPLHIAAEMV SPDMVAVLLD HHADPNVRTV GGITPLDILR TLTSDFLFKG AVPGLTHIEP NKLRLCLELV QSAAMVISRE
401: EGNNSNNQNN DNNTGIYPHM NEEHNSGSSG GSNNNLDSRL VYLNLGAGTG QMGPGRDQGD DHNSQREGMS RHHHHHQDPS TMYHHHHQHH F

Arabidopsis Description

NPR5Regulatory protein NPR5 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.