Factsheet for Solyc04g040220.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g038790.1.1
Solyc02g084080.1.1
Solyc02g084110.1.1
Solyc02g084160.1.1
Solyc02g084200.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41370.1	Solyc02g038790.1.1	AT3G51180.1	21798944
AT2G41370.1	Solyc02g084080.1.1	AT3G51180.1	21798944
AT2G41370.1	Solyc02g084110.1.1	AT3G51180.1	21798944
AT2G41370.1	Solyc02g084160.1.1	AT3G51180.1	21798944
AT2G41370.1	Solyc02g084200.1.1	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027591	Potato	cytosol	95.92	96.96
VIT_08s0007g05740.t01	Wine grape	cytosol	81.12	77.14
CDX79940	Canola	cytosol	51.93	76.34
Bra004617.1-P	Field mustard	cytosol	51.72	76.03
Solyc10g079750.1.1	Tomato	cytosol	79.4	75.82
Solyc10g079460.1.1	Tomato	cytosol	79.4	74.9
KRH72058	Soybean	cytosol	75.97	74.37
GSMUA_Achr5P16220_001	Banana	cytosol	70.17	74.15
AT3G57130.1	Thale cress	cytosol	74.25	74.09
AT2G41370.1	Thale cress	cytosol	77.9	73.93
KRH66789	Soybean	cytosol	76.61	73.31
CDY23854	Canola	cytosol	75.54	73.18
CDY14765	Canola	cytosol, endoplasmic reticulum, plastid	76.39	73.1
Bra007306.1-P	Field mustard	cytosol	72.1	72.73
CDY06929	Canola	cytosol, endoplasmic reticulum, plastid	75.97	72.69
CDX72067	Canola	cytosol	72.1	72.57
CDY06130	Canola	cytosol	71.89	72.51
CDX76040	Canola	cytosol	44.85	71.82
Bra016938.1-P	Field mustard	cytosol	74.89	71.66
Bra014645.1-P	Field mustard	cytosol	44.64	71.48
CDY35774	Canola	cytosol	44.21	70.79
Bra003268.1-P	Field mustard	cytosol, endoplasmic reticulum, plastid	69.96	70.56
CDX67678	Canola	cytosol, endoplasmic reticulum, plastid	69.96	70.56
GSMUA_Achr5P08160_001	Banana	cytosol	63.73	69.56
GSMUA_Achr3P08710_001	Banana	cytosol	63.3	69.25
GSMUA_Achr11P...	Banana	cytosol	64.16	69.21
GSMUA_AchrUn_...	Banana	cytosol	62.23	69.21
CDY30971	Canola	cytosol	66.95	68.57
GSMUA_Achr8P22070_001	Banana	cytosol	60.73	68.19
Zm00001d011878_P001	Maize	cytosol	71.24	67.76
Os01t0948900-01	Rice	cytosol	47.85	66.17
OQU88196	Sorghum	cytosol	71.89	66.08
Zm00001d042111_P001	Maize	cytosol	71.24	65.35
TraesCS3D01G484100.1	Wheat	cytosol	70.6	64.38
HORVU3Hr1G106880.5	Barley	cytosol	70.82	64.33
TraesCS3B01G537400.1	Wheat	cytosol	70.82	64.2
TraesCS3A01G489000.1	Wheat	cytosol	70.82	64.2
GSMUA_AchrUn_...	Banana	cytosol	57.94	60.27
Solyc05g018160.1.1	Tomato	cytosol	35.19	58.57
Zm00001d052468_P002	Maize	cytosol	58.8	58.17
EES16520	Sorghum	cytosol	59.66	57.92
Zm00001d004966_P001	Maize	cytosol	58.37	57.51
Zm00001d023246_P001	Maize	cytosol	58.58	57.47
EES09234	Sorghum	cytosol	59.23	57.02
TraesCS5A01G134700.2	Wheat	cytosol	59.87	56.59
TraesCS5B01G133700.1	Wheat	cytosol	59.87	56.59
TraesCS5D01G139600.1	Wheat	cytosol	59.87	56.59
Os11t0141900-00	Rice	cytosol	59.66	56.28
Os12t0138500-01	Rice	cytosol	37.98	54.46
CDY33841	Canola	cytosol	9.66	45.45
Solyc07g044980.2.1	Tomato	nucleus	28.54	23.21
Solyc02g069310.2.1	Tomato	cytosol, plastid	28.11	22.55
Solyc07g040690.2.1	Tomato	cytosol	25.11	20.31

Protein Annotations

Gene3D:1.25.40.20	MapMan:15.5.4.7.2	Gene3D:3.30.710.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0006950	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009605	GO:GO:0009607
GO:GO:0009719	GO:GO:0009864	GO:GO:0009987	GO:GO:0019005	GO:GO:0019538	GO:GO:0030162
GO:GO:0031625	GO:GO:0042787	GO:GO:0043161	InterPro:IPR000210	InterPro:IPR002110	InterPro:IPR020683
InterPro:IPR036770	UniProt:K4BRF9	InterPro:NPR_central_dom	PFAM:PF00651	PFAM:PF11900	PFAM:PF12796
PFscan:PS50088	PFscan:PS50097	PFscan:PS50297	PANTHER:PTHR24413	PANTHER:PTHR24413:SF116	InterPro:SKP1/BTB/POZ_sf
SMART:SM00225	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF54695	EnsemblPlantsGene:Solyc04g040220.2	EnsemblPlants:Solyc04g040220.2.1
UniParc:UPI000276620B	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:+:11919074..11921593

Molecular Weight (calculated)

51115.2 Da

IEP (calculated)

6.505

GRAVY (calculated)

-0.156

Length

466 amino acids

Sequence
(BLAST)

001: MSNNPEDPLR SLSLDYLNLL INGQAFSDVT FHVEGHLVHA HRCVLAARSQ FFRKFFCGPS SPQSGPQLGS VNGPRDTGSP ASSVVIPVNS VGYEVFLLMM
101: QFLYSGQVSI VPQKHEPRPN CGERGCWHTH CTSAVDLALD TLSAARSFGV EQLALLTQKQ LAIMVEKASI EDVMRVLIAS RKQDMNQLWT TCSHLVAKSG
201: LPPEMLAKHL PIDVVAKIEE LRLKSNLARR SLMPHHHHHL DLSSSAELED QKIRRMRRAL DSSDVELVKL MVMGEGLNLD ESIALHYAVE NCSREVVKAL
301: LELGAADVNF PAGPAGKTPL HIAAEMVSPD MVAVLLDHHA DPNVRMLDGI TPLDILRTLT SDFLFKGTVP GHVHVEPNKL RLCLELVQSA AMVISREEGS
401: ANIDLSSTNI YPPNNMSDDH TSSTSTSGTN NIDSRMVYLN LGGGVTNTSS THDHPSSMYH HSSHEY

Best Arabidopsis Sequence Match ( AT2G41370.1 )
(BLAST)

001: MSNLEESLRS LSLDFLNLLI NGQAFSDVTF SVEGRLVHAH RCILAARSLF FRKFFCGTDS PQPVTGIDPT QHGSVPASPT RGSTAPAGII PVNSVGYEVF
101: LLLLQFLYSG QVSIVPQKHE PRPNCGERGC WHTHCSAAVD LALDTLAASR YFGVEQLALL TQKQLASMVE KASIEDVMKV LIASRKQDMH QLWTTCSHLV
201: AKSGLPPEIL AKHLPIDVVT KIEELRLKSS IARRSLMPHN HHHDLSVAQD LEDQKIRRMR RALDSSDVEL VKLMVMGEGL NLDESLALHY AVESCSREVV
301: KALLELGAAD VNYPAGPAGK TPLHIAAEMV SPDMVAVLLD HHADPNVRTV GGITPLDILR TLTSDFLFKG AVPGLTHIEP NKLRLCLELV QSAAMVISRE
401: EGNNSNNQNN DNNTGIYPHM NEEHNSGSSG GSNNNLDSRL VYLNLGAGTG QMGPGRDQGD DHNSQREGMS RHHHHHQDPS TMYHHHHQHH F

Arabidopsis Description

NPR5Regulatory protein NPR5 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.