Factsheet for GSMUA_AchrUn_randomP10930_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P19920_001
GSMUA_Achr3P11230_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41370.1	GSMUA_Achr1P19920_001	AT3G51180.1	21798944
AT2G41370.1	GSMUA_Achr3P11230_001	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P08160_001	Banana	cytosol	70.76	74.24
GSMUA_AchrUn_...	Banana	cytosol	68.97	73.75
GSMUA_Achr3P08710_001	Banana	cytosol	70.09	73.71
GSMUA_Achr8P22070_001	Banana	cytosol	66.29	71.57
CDX79940	Canola	cytosol	48.44	68.45
Bra004617.1-P	Field mustard	cytosol	48.21	68.14
GSMUA_Achr11P...	Banana	cytosol	64.73	67.13
Bra014645.1-P	Field mustard	cytosol	41.74	64.26
CDX76040	Canola	cytosol	41.52	63.92
CDY35774	Canola	cytosol	41.07	63.23
GSMUA_Achr5P16220_001	Banana	cytosol	61.16	62.13
KRH72058	Soybean	cytosol	63.39	59.66
PGSC0003DMT400027591	Potato	cytosol	61.16	59.44
VIT_08s0007g05740.t01	Wine grape	cytosol	64.96	59.39
KRH66789	Soybean	cytosol	64.06	58.93
AT2G41370.1	Thale cress	cytosol	64.29	58.66
AT3G57130.1	Thale cress	cytosol	60.94	58.46
CDY23854	Canola	cytosol	62.72	58.42
CDY14765	Canola	cytosol, endoplasmic reticulum, plastid	63.39	58.32
CDY06929	Canola	cytosol, endoplasmic reticulum, plastid	63.39	58.32
Solyc04g040220.2.1	Tomato	cytosol	60.27	57.94
Bra016938.1-P	Field mustard	cytosol	62.5	57.49
Os12t0138500-01	Rice	cytosol	41.29	56.92
Bra007306.1-P	Field mustard	cytosol	58.48	56.71
CDY06130	Canola	cytosol	58.48	56.71
PGSC0003DMT400076710	Potato	cytosol	61.38	56.47
CDX72067	Canola	cytosol	58.26	56.37
PGSC0003DMT400021076	Potato	cytosol	61.16	55.92
Solyc10g079750.1.1	Tomato	cytosol	60.71	55.74
Bra003268.1-P	Field mustard	cytosol, endoplasmic reticulum, plastid	57.37	55.63
Solyc10g079460.1.1	Tomato	cytosol	61.16	55.47
CDX67678	Canola	cytosol, endoplasmic reticulum, plastid	56.7	54.98
CDY30971	Canola	cytosol	55.58	54.73
Zm00001d023246_P001	Maize	cytosol	56.25	53.05
Zm00001d052468_P002	Maize	cytosol	55.36	52.65
EES16520	Sorghum	cytosol	56.25	52.5
EES09234	Sorghum	cytosol	56.03	51.86
Zm00001d004966_P001	Maize	cytosol	54.02	51.16
TraesCS5D01G139600.1	Wheat	cytosol	56.03	50.91
TraesCS5B01G133700.1	Wheat	cytosol	55.8	50.71
TraesCS5A01G134700.2	Wheat	cytosol	55.8	50.71
Os11t0141900-00	Rice	cytosol	55.58	50.4
Solyc05g018160.1.1	Tomato	cytosol	30.36	48.57
CDY33841	Canola	cytosol	10.27	46.46
GSMUA_Achr5P02120_001	Banana	cytosol	26.34	20.21
GSMUA_Achr4P32060_001	Banana	cytosol, plastid	25.45	19.16
GSMUA_Achr3P25880_001	Banana	cytosol	23.88	18.84
GSMUA_Achr8P05490_001	Banana	cytosol	24.33	18.76
GSMUA_Achr2P16670_001	Banana	cytosol	24.33	18.66
GSMUA_AchrUn_...	Banana	cytosol	23.21	18.09
GSMUA_Achr7P09190_001	Banana	cytosol	22.54	17.57
GSMUA_Achr6P00950_001	Banana	nucleus	24.33	17.3

Protein Annotations

Gene3D:1.25.40.20	MapMan:15.5.4.7.2	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_AchrUn_randomG10930_001	EnsemblPlants:GSMUA_AchrUn_randomP10930_001	EnsemblPlants:GSMUA_AchrUn_randomT10930_001	InterPro:IPR002110
InterPro:IPR020683	InterPro:IPR036770	UniProt:M0U852	InterPro:NPR_central_dom	PFAM:PF11900	PFAM:PF12796
PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR24413	PANTHER:PTHR24413:SF116	SMART:SM00248	SUPFAM:SSF48403
UniParc:UPI000295C1AF	SEG:seg	:	:	:	:

Description

BTBA3 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG10930_001]

Coordinates

chrchrUn_random:-:53439242..53441644

Molecular Weight (calculated)

49655.8 Da

IEP (calculated)

6.987

GRAVY (calculated)

-0.039

Length

448 amino acids

Sequence
(BLAST)

001: MEEALKSLTL DYLNLLINGQ AFSDVTFSVE GRFFLYSGQA SVVPQKHQPR SGCGERSCWH THCTAAVDLA LDTLAAARSF GIKQLEQIIE KQLAVMVEKA
101: SIDDVMKVLV ASRQQDLQQL WTTCSHLVAK SGLPAEVLAK HLPIDVVARI EELRFKSSLV RRSSFVAHHH HQQVDVAGSS ADIDDHHHKI RRMRRALDSS
201: DVELVKLMVM GEGLNLDDAL ALHYAVENCS REVVKALLEL GAADVNRPAG PSGRTPLHVA AEMVCPDMVA VLLDHHADPN VRTVDGVTPI DILRTLTSEF
301: LFKGAVPALS HIEPNKLRLC LELVQSAALV MTREEANNCG AESNPSTSLF PQMSPEAGSC NASSRDRRFV KGDFTVASFF QGFCSSRGNR EKSLCSYRHL
401: TIFNVLLDLF GLLCWSTEWW RCKSIFSLSC QFLSNSIQKP KLLYCKLD

Best Arabidopsis Sequence Match ( AT2G41370.1 )
(BLAST)

001: MSNLEESLRS LSLDFLNLLI NGQAFSDVTF SVEGRLVHAH RCILAARSLF FRKFFCGTDS PQPVTGIDPT QHGSVPASPT RGSTAPAGII PVNSVGYEVF
101: LLLLQFLYSG QVSIVPQKHE PRPNCGERGC WHTHCSAAVD LALDTLAASR YFGVEQLALL TQKQLASMVE KASIEDVMKV LIASRKQDMH QLWTTCSHLV
201: AKSGLPPEIL AKHLPIDVVT KIEELRLKSS IARRSLMPHN HHHDLSVAQD LEDQKIRRMR RALDSSDVEL VKLMVMGEGL NLDESLALHY AVESCSREVV
301: KALLELGAAD VNYPAGPAGK TPLHIAAEMV SPDMVAVLLD HHADPNVRTV GGITPLDILR TLTSDFLFKG AVPGLTHIEP NKLRLCLELV QSAAMVISRE
401: EGNNSNNQNN DNNTGIYPHM NEEHNSGSSG GSNNNLDSRL VYLNLGAGTG QMGPGRDQGD DHNSQREGMS RHHHHHQDPS TMYHHHHQHH F

Arabidopsis Description

NPR5Regulatory protein NPR5 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.