CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES02530
EES03778
KXG22247
KXG36997
KXG39494

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45110.1	EES02530	AT5G06960.1	21798944
AT5G45110.1	EES03778	AT5G06960.1	21798944
AT5G45110.1	KXG22247	AT5G06960.1	21798944
AT5G45110.1	KXG36997	AT5G06960.1	21798944
AT5G45110.1	KXG39494	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012660_P002	Maize	cytosol	94.69	94.69
Os01t0767900-01	Rice	plastid	81.96	80.16
TraesCS3B01G337700.1	Wheat	plastid	77.78	79.31
TraesCS3D01G302900.1	Wheat	cytosol, plastid	77.29	79.08
TraesCS3A01G298800.1	Wheat	plastid	77.94	78.32
HORVU3Hr1G074640.4	Barley	cytosol, plastid	76.81	77.31
GSMUA_Achr4P32060_001	Banana	cytosol, plastid	66.51	69.41
GSMUA_Achr5P02120_001	Banana	cytosol	65.22	69.35
KRH36735	Soybean	cytosol, plastid	59.1	62.2
VIT_10s0042g01250.t01	Wine grape	cytosol, plastid	58.45	61.84
KRH11740	Soybean	plastid	58.29	61.36
PGSC0003DMT400054660	Potato	cytosol, plastid	53.46	57.14
Solyc02g069310.2.1	Tomato	cytosol, plastid	53.14	56.8
KRH73603	Soybean	cytosol, plastid	51.37	54.07
CDX78955	Canola	plastid	50.89	53.74
Bra013416.1-P	Field mustard	plastid	50.72	53.57
KRH14520	Soybean	cytosol, plastid	50.56	53.22
CDX99350	Canola	plastid	50.08	52.89
CDY26398	Canola	plastid	47.83	52.85
PGSC0003DMT400002412	Potato	cytosol	48.47	52.35
Solyc07g044980.2.1	Tomato	nucleus	48.15	52.18
AT5G45110.1	Thale cress	cytosol, plastid	49.11	52.05
Bra021949.1-P	Field mustard	plastid	47.02	51.96
CDX82577	Canola	plastid	45.25	51.84
Bra025093.1-P	Field mustard	plastid	45.57	51.83
CDY39410	Canola	plastid	45.57	51.83
AT4G19660.2	Thale cress	cytosol, plastid	49.28	50.92
EER91108	Sorghum	plastid	48.95	50.84
EES00131	Sorghum	cytosol	38.97	41.51
CDY36698	Canola	cytosol	33.33	40.67
EES16520	Sorghum	cytosol	20.29	26.25
EES09234	Sorghum	cytosol	20.29	26.03
OQU88196	Sorghum	cytosol	20.93	25.64

Protein Annotations

Gene3D:1.25.40.20	MapMan:11.8.2.1	Gene3D:3.30.710.10	EntrezGene:8072120	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	InterPro:BTB/POZ_dom	UniProt:C5XKY6	EnsemblPlants:EES01524	ProteinID:EES01524	ProteinID:EES01524.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0019005	GO:GO:0019538	GO:GO:0030162	GO:GO:0031625	GO:GO:0042787	GO:GO:0043161
InterPro:IPR000210	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	InterPro:NPR1/NIM1-like_C	PFAM:PF00651
PFAM:PF12313	PFAM:PF12796	PFscan:PS50088	PFscan:PS50097	PFscan:PS50297	PANTHER:PTHR24413
PANTHER:PTHR24413:SF124	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SMART:SM00248	EnsemblPlantsGene:SORBI_3003G308700	SUPFAM:SSF48403
SUPFAM:SSF54695	unigene:Sbi.10857	UniParc:UPI0001A84329	RefSeq:XP_002456404.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:+:63729938..63734226

Molecular Weight (calculated)

67651.8 Da

IEP (calculated)

5.632

GRAVY (calculated)

-0.277

Length

621 amino acids

Sequence
(BLAST)

001: MEPSSSITFA SSSSYLSNGS SPCSVAMPPP GPPQAPPLAG GEGWGGGVAT AGSGSSVEAV SLNRLSKNLE RLLLDRDLDC SDADVEVPDG GPPVPIHRCI
101: LAARSDFFYD LFAARGRGGA LRGDATAGAG GAAEGAASGR PRYKMEELVP GGRVGREAFQ AFLGYMYTGK LRPSPVDVVS CADPVCPHDS CPPAIRSAVE
201: LMYAACTFKI PELTSLFQRR LLNFVDKTLV EDVIPILKVA SHSGLTQVID KCIQRIARSD LDDISLDKEL PPEAVEEIKN LRKKSQTADG DGDAFISDPV
301: HEKRVRRIHR ALDSDDVELV KLLLNESDIT LDDANALHYA ASYCDNKVVS ELLDLALANL NLKNSRGYTA LHLAAMRREP AIIMCLLNKG ANVSQLTADG
401: RSAIGICRRL TRLKDYNTKM EQGQESNKDR LCIDILEREM MRNPMAVEDA VTSPLLADDL HMKLLYLENR VAFARLFFPA EAKVAMQIAQ ADTTEEFGGI
501: VAASTSGKLR EVDLNETPVT QNKRLRSRVD ALMKTVELGR RYFPNCSQVL DKFLEDDLPD GLDQFYLQRG TADEQKVKRM RFCELKEDVL KAFSKDKADS
601: SMLSGLSSSS SCSPPQKSAK R

Best Arabidopsis Sequence Match ( AT5G45110.1 )
(BLAST)

001: MATLTEPSSS LSFTSSHFSY GSIGSNHFSS SSASNPEVVS LTKLSSNLEQ LLSNSDCDYS DAEIIVDGVP VGVHRCILAA RSKFFQDLFK KEKKISKTEK
101: PKYQLREMLP YGAVAHEAFL YFLSYIYTGR LKPFPLEVST CVDPVCSHDC CRPAIDFVVQ LMYASSVLQV PELVSSFQRR LCNFVEKTLV ENVLPILMVA
201: FNCKLTQLLD QCIERVARSD LYRFCIEKEV PPEVAEKIKQ LRLISPQDEE TSPKISEKLL ERIGKILKAL DSDDVELVKL LLTESDITLD QANGLHYSVV
301: YSDPKVVAEI LALDMGDVNY RNSRGYTVLH FAAMRREPSI IISLIDKGAN ASEFTSDGRS AVNILRRLTN PKDYHTKTAK GRESSKARLC IDILEREIRK
401: NPMVLDTPMC SISMPEDLQM RLLYLEKRVG LAQLFFPTEA KVAMDIGNVE GTSEFTGLSP PSSGLTGNLS QVDLNETPHM QTQRLLTRMV ALMKTVETGR
501: RFFPYGSEVL DKYMAEYIDD DILDDFHFEK GSTHERRLKR MRYRELKDDV QKAYSKDKES KIARSCLSAS SSPSSSSIRD DLHNTT

Arabidopsis Description

NPR3NPR3 [Source:UniProtKB/TrEMBL;Acc:A0A178UGU4]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.