CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES00131
EES02530
EES03778
EES05136
EES09234
EES10652
EES16520
KXG22247
KXG36997
KXG39494
OQU88196

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06960.1	EES00131	AT1G64280.1	10659709
AT5G06960.1	EES00131	AT1G64280.1	10662863
AT5G06960.1	EES00131	AT1G64280.1	12383081
AT5G06960.1	EES00131	AT1G64280.1	15634206
AT5G06960.1	EES09234	AT2G41370.1	21798944
AT5G06960.1	EES16520	AT2G41370.1	21798944
AT5G06960.1	OQU88196	AT2G41370.1	21798944
AT5G06960.1	EES05136	AT3G02000.1	19218396
AT5G06960.1	EES10652	AT3G02000.1	19218396
AT5G06960.1	EES02530	AT5G06960.1	17098811
AT5G06960.1	EES03778	AT5G06960.1	17098811
AT5G06960.1	KXG22247	AT5G06960.1	17098811
AT5G06960.1	KXG36997	AT5G06960.1	17098811
AT5G06960.1	KXG39494	AT5G06960.1	17098811
AT5G06960.1	EES02530	AT5G06960.1	21798944
AT5G06960.1	EES03778	AT5G06960.1	21798944
AT5G06960.1	KXG22247	AT5G06960.1	21798944
AT5G06960.1	KXG36997	AT5G06960.1	21798944
AT5G06960.1	KXG39494	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010658_P001	Maize	nucleus	83.13	80.0
EES02530	Sorghum	nucleus	70.48	70.91
KXG36997	Sorghum	nucleus	68.07	67.87
KRH36324	Soybean	nucleus	67.77	67.77
KXG39494	Sorghum	nucleus	68.07	67.46
Solyc11g064950.1.1	Tomato	nucleus	65.66	67.28
PGSC0003DMT400024428	Potato	nucleus	65.66	67.28
Os05t0492000-00	Rice	nucleus	65.66	66.06
AT5G06950.5	Thale cress	nucleus	65.06	65.45
Bra034767.1-P	Field mustard	nucleus	64.76	64.95
CDY08443	Canola	nucleus	64.76	64.95
Bra009241.1-P	Field mustard	nucleus	60.24	64.52
CDX98971	Canola	nucleus	63.25	64.02
Solyc01g008730.2.1	Tomato	nucleus	62.95	63.91
CDX70053	Canola	nucleus	62.95	63.91
KRH66777	Soybean	nucleus	55.42	63.45
CDX73830	Canola	nucleus	63.25	63.44
Bra001443.1-P	Field mustard	nucleus	63.25	63.44
CDY00762	Canola	nucleus	63.25	63.44
CDY52616	Canola	nucleus	63.55	63.36
CDY50562	Canola	nucleus	63.55	63.17
Bra038705.1-P	Field mustard	nucleus	63.55	63.17
AT5G06960.1	Thale cress	nucleus	62.35	62.73
CDY05010	Canola	nucleus	60.54	61.66
PGSC0003DMT400026710	Potato	mitochondrion	32.53	61.36
CDY14061	Canola	nucleus	60.24	61.35
Bra028713.1-P	Field mustard	nucleus	60.24	61.35
TraesCS1A01G096300.1	Wheat	nucleus	60.84	60.3
AT3G12250.4	Thale cress	nucleus	64.16	60.0
TraesCS1B01G127400.1	Wheat	nucleus	60.54	59.12
TraesCS1D01G105300.1	Wheat	nucleus	60.24	59.0
CDY42138	Canola	nucleus	55.72	57.1
PGSC0003DMT400060922	Potato	nucleus	45.78	56.72
Solyc10g080780.1.1	Tomato	cytosol	44.58	55.02
HORVU1Hr1G068220.1	Barley	nucleus	54.52	52.77
EES03778	Sorghum	nucleus	73.8	52.35
VIT_08s0007g05170.t01	Wine grape	nucleus	71.08	52.33
PGSC0003DMT400060926	Potato	nucleus	68.07	52.19
KRG93068	Soybean	nucleus	67.17	50.23
Solyc10g080770.1.1	Tomato	nucleus	68.07	50.22
VIT_13s0084g00660.t01	Wine grape	nucleus	69.28	49.04
KRG95103	Soybean	nucleus	67.77	49.02
KRH66771	Soybean	nucleus	67.47	48.7
KRH20680	Soybean	nucleus	68.37	48.4
KRH13334	Soybean	nucleus	67.77	45.27
OQU76203	Sorghum	nucleus	55.72	40.04
HORVU0Hr1G032230.4	Barley	nucleus	40.96	38.75
KXG27222	Sorghum	nucleus	46.69	37.99
KXG38496	Sorghum	nucleus	34.04	36.33
KXG22976	Sorghum	nucleus	50.6	34.78
OQU82891	Sorghum	nucleus	50.9	34.63
OQU89155	Sorghum	nucleus	44.28	34.59
KXG20382	Sorghum	cytosol	15.66	32.91
KXG35912	Sorghum	nucleus	46.99	31.2
KXG33735	Sorghum	nucleus	48.8	30.39
OQU78097	Sorghum	nucleus	46.99	29.89
KXG29702	Sorghum	nucleus	42.77	29.1
OQU79985	Sorghum	golgi, vacuole	44.88	28.88
OQU76708	Sorghum	nucleus	25.9	27.65

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	MapMan:26.8.3.1.2	UniProt:A0A1B6P931	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR004827	InterPro:IPR025422	EnsemblPlants:KXG22247	ProteinID:KXG22247	ProteinID:KXG22247.1
PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952
PANTHER:PTHR22952:SF206	SMART:SM00338	EnsemblPlantsGene:SORBI_3009G180700	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI0003C712A3
InterPro:bZIP	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:53491551..53494415

Molecular Weight (calculated)

36984.8 Da

IEP (calculated)

6.798

GRAVY (calculated)

-0.519

Length

332 amino acids

Sequence
(BLAST)

001: MAYASPGTDT STDLDTDEKN QMLELGQLVS LTASDSGNKS KDKLGQKALR RLAQNREAAR KSRLRKKAYV EQLENSRLKL SQLEQELQRA RQQGIFIPTP
101: GDQPNSTTEN GALAFDMDYA RWQDDHNKQI NELRAALNAH ASDDDLRHMI DSIMAYYSEA FRLKRVAAKA DAFHVLSGMW KTPVERCFMW FGGLRPSEIL
201: KLLASHLEPL TEQQLASIYS LQQSSEQAEE DLSQGVRALQ QSVAETLASG SLCPAGSSGN AADCSGQMAV AVGKLGTLES FLQEADDLRR RILEQMQHIL
301: TTRQSARALL AISDYLSRLR ALSSLWIARP RE

Best Arabidopsis Sequence Match ( AT3G12250.1 )
(BLAST)

001: MADTSSRTDV STDGDTDHRD LGSDRGHMHA AASDSSDRSK DKLDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSSG
101: DQAHSTGGNG ALAFDAEHSR WLEEKNRQMN ELRSALNAHA GDTELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQVMGINSL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSDNVA SYMGQMAMAM GQLGTLEGFI RQADNLRLQT LQQMLRVLTT
301: RQSARALLAI HDYSSRLRAL SSLWLARPRE

Arabidopsis Description

TGA6TGACG motif-binding factor 6 [Source:UniProtKB/TrEMBL;Acc:F4J8P7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.