Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY50562 | Canola | nucleus | 100.0 | 100.0 |
| CDY52616 | Canola | nucleus | 99.1 | 99.4 |
| Bra001443.1-P | Field mustard | nucleus | 94.91 | 95.77 |
| Bra034767.1-P | Field mustard | nucleus | 94.61 | 95.47 |
| Bra009241.1-P | Field mustard | nucleus | 84.73 | 91.29 |
| AT3G12250.4 | Thale cress | nucleus | 94.91 | 89.3 |
| Bra028713.1-P | Field mustard | nucleus | 78.44 | 80.37 |
| KRH36324 | Soybean | nucleus | 78.14 | 78.61 |
| Os01t0279900-01 | Rice | nucleus | 77.25 | 78.42 |
| GSMUA_Achr8P05800_001 | Banana | nucleus | 77.84 | 78.31 |
| PGSC0003DMT400024428 | Potato | nucleus | 75.75 | 78.09 |
| Solyc11g064950.1.1 | Tomato | nucleus | 75.75 | 78.09 |
| GSMUA_Achr3P25020_001 | Banana | nucleus | 77.54 | 78.01 |
| EES02530 | Sorghum | nucleus | 74.85 | 75.76 |
| TraesCS3A01G190700.2 | Wheat | nucleus | 74.85 | 75.3 |
| TraesCS3B01G220400.2 | Wheat | nucleus | 74.85 | 75.3 |
| HORVU3Hr1G042790.4 | Barley | nucleus | 74.55 | 75.23 |
| TraesCS3D01G194800.2 | Wheat | nucleus | 74.25 | 74.7 |
| Solyc01g008730.2.1 | Tomato | nucleus | 73.05 | 74.62 |
| KXG39494 | Sorghum | nucleus | 74.55 | 74.33 |
| Os03t0318600-01 | Rice | nucleus | 73.95 | 74.17 |
| TraesCS4B01G178600.1 | Wheat | nucleus | 73.65 | 73.65 |
| HORVU4Hr1G052330.3 | Barley | nucleus | 73.65 | 73.65 |
| Os07t0687700-01 | Rice | nucleus | 73.65 | 73.65 |
| TraesCS4A01G126300.2 | Wheat | nucleus | 73.65 | 73.43 |
| TraesCS4D01G180200.4 | Wheat | nucleus | 73.65 | 73.43 |
| KXG36997 | Sorghum | nucleus | 72.75 | 72.97 |
| Zm00001d022542_P002 | Maize | nucleus | 72.46 | 72.67 |
| TraesCS2D01G096800.2 | Wheat | nucleus | 72.75 | 72.32 |
| TraesCS2A01G097500.2 | Wheat | nucleus | 72.75 | 72.32 |
| TraesCS2B01G113200.2 | Wheat | nucleus | 72.75 | 72.32 |
| HORVU3Hr1G042830.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 31.44 | 70.47 |
| PGSC0003DMT400026710 | Potato | mitochondrion | 36.83 | 69.89 |
| HORVU2Hr1G016580.5 | Barley | nucleus | 69.76 | 69.14 |
| KXG22247 | Sorghum | nucleus | 63.17 | 63.55 |
| Os05t0492000-00 | Rice | nucleus | 61.08 | 61.82 |
| Zm00001d010658_P001 | Maize | nucleus | 61.98 | 60.0 |
| Zm00001d008225_P001 | Maize | nucleus | 74.85 | 59.52 |
| KRG93068 | Soybean | nucleus | 78.44 | 59.01 |
| Zm00001d028936_P001 | Maize | nucleus | 67.07 | 57.29 |
| VIT_13s0084g00660.t01 | Wine grape | nucleus | 80.24 | 57.14 |
| GSMUA_Achr10P... | Banana | nucleus | 76.65 | 56.02 |
| KRH20680 | Soybean | nucleus | 78.44 | 55.86 |
| TraesCS1B01G127400.1 | Wheat | nucleus | 56.29 | 55.29 |
| TraesCS1A01G096300.1 | Wheat | nucleus | 55.39 | 55.22 |
| GSMUA_Achr11P... | Banana | nucleus | 78.14 | 54.6 |
| TraesCS1D01G105300.1 | Wheat | nucleus | 54.79 | 53.98 |
| TraesCS3A01G334100.1 | Wheat | nucleus | 76.65 | 53.89 |
| HORVU3Hr1G079010.5 | Barley | nucleus | 76.95 | 53.88 |
| TraesCS3D01G327600.1 | Wheat | nucleus | 76.35 | 53.46 |
| EES03778 | Sorghum | nucleus | 74.85 | 53.42 |
| TraesCS3B01G365100.1 | Wheat | nucleus | 76.05 | 53.25 |
| KRH13334 | Soybean | nucleus | 76.95 | 51.71 |
| Bra015646.1-P | Field mustard | nucleus | 52.1 | 51.33 |
| HORVU1Hr1G068220.1 | Barley | nucleus | 51.2 | 49.85 |
| Zm00001d043153_P001 | Maize | nucleus | 60.48 | 47.87 |
| Bra009063.1-P | Field mustard | nucleus | 51.2 | 46.98 |
| Bra028604.1-P | Field mustard | nucleus | 50.9 | 46.96 |
| Bra004329.1-P | Field mustard | nucleus | 61.68 | 46.71 |
| Bra024366.1-P | Field mustard | nucleus | 51.2 | 46.59 |
| Zm00001d012553_P003 | Maize | nucleus | 64.67 | 45.96 |
| Bra009233.1-P | Field mustard | cytosol | 38.32 | 45.71 |
| Bra016389.1-P | Field mustard | nucleus | 50.0 | 45.38 |
| Bra031871.1-P | Field mustard | nucleus | 50.0 | 45.14 |
| Bra031364.1-P | Field mustard | nucleus | 50.6 | 44.71 |
| Bra031622.1-P | Field mustard | nucleus | 54.19 | 42.29 |
| Os01t0808100-01 | Rice | nucleus | 45.51 | 41.76 |
| Bra037809.1-P | Field mustard | nucleus | 46.71 | 39.8 |
| HORVU0Hr1G032230.4 | Barley | nucleus | 41.62 | 39.6 |
| Bra018634.1-P | Field mustard | nucleus | 54.79 | 38.53 |
| Bra037374.1-P | Field mustard | nucleus | 32.93 | 35.03 |
| Bra005914.1-P | Field mustard | nucleus | 45.21 | 34.79 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | MapMan:15.5.4.7.1 | MapMan:26.8.3.1.2 | EnsemblPlantsGene:Bra038705 | EnsemblPlants:Bra038705.1 |
| EnsemblPlants:Bra038705.1-P | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR004827 | InterPro:IPR025422 | UniProt:M4FC89 |
| PFAM:PF00170 | PFAM:PF14144 | ScanProsite:PS00036 | PFscan:PS50217 | PFscan:PS51806 | PANTHER:PTHR22952 |
| PANTHER:PTHR22952:SF244 | SMART:SM00338 | SUPFAM:SSF57959 | InterPro:TGA_domain | UniParc:UPI000254524D | InterPro:bZIP |
| SEG:seg | : | : | : | : | : |
Description
AT3G12250 (E=3e-141) TGA6, BZIP45 | TGA6 (TGACG MOTIF-BINDING FACTOR 6); DNA binding / transcription factor
Coordinates
chrA01:-:26484138..26486033
Molecular Weight (calculated)
37125.0 Da
IEP (calculated)
8.474
GRAVY (calculated)
-0.540
Length
334 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQLMADTSS RTDVSTDGDT DPRDLGSDRG QTMLAVASDS SGSKDKLDQK TLRRLAQNRE AARKSRLRKK AYVQQLENSR LKLTQLEQEL QRARQQGVFI
101: SSSGDQAHST GGNGALAFDA EHSRWLEEKN RQMNELRSAL NAHAGDAELL IIVDGVMTHY EELFRIKSNA AKNDVFHLLS GMWKTPAERC FLWLGGFRSS
201: ELLKLLANQL EPMTERQVMG LNSLQQTSQQ AEDALSQGME SLQQSLADTL SSGTLGSSSS DNVASYMGQM AMAMGQLGTL EGFIRQADNL RLQTLQQMIR
301: VLTTRQSARA LLAIHDYTSR LRALSSLWLA RPRE
101: SSSGDQAHST GGNGALAFDA EHSRWLEEKN RQMNELRSAL NAHAGDAELL IIVDGVMTHY EELFRIKSNA AKNDVFHLLS GMWKTPAERC FLWLGGFRSS
201: ELLKLLANQL EPMTERQVMG LNSLQQTSQQ AEDALSQGME SLQQSLADTL SSGTLGSSSS DNVASYMGQM AMAMGQLGTL EGFIRQADNL RLQTLQQMIR
301: VLTTRQSARA LLAIHDYTSR LRALSSLWLA RPRE
001: MADTSSRTDV STDGDTDHRD LGSDRGHMHA AASDSSDRSK DKLDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSSG
101: DQAHSTGGNG ALAFDAEHSR WLEEKNRQMN ELRSALNAHA GDTELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQVMGINSL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSDNVA SYMGQMAMAM GQLGTLEGFI RQADNLRLQT LQQMLRVLTT
301: RQSARALLAI HDYSSRLRAL SSLWLARPRE
101: DQAHSTGGNG ALAFDAEHSR WLEEKNRQMN ELRSALNAHA GDTELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQVMGINSL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSDNVA SYMGQMAMAM GQLGTLEGFI RQADNLRLQT LQQMLRVLTT
301: RQSARALLAI HDYSSRLRAL SSLWLARPRE
Arabidopsis Description
TGA6TGACG motif-binding factor 6 [Source:UniProtKB/TrEMBL;Acc:F4J8P7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.