Factsheet for VIT_13s0084g00660.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0146g00220.t01
VIT_08s0007g05740.t01
VIT_11s0016g01990.t01
VIT_13s0084g00660.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06960.1	VIT_11s0016g01990.t01	AT1G64280.1	10659709
AT5G06960.1	VIT_11s0016g01990.t01	AT1G64280.1	10662863
AT5G06960.1	VIT_11s0016g01990.t01	AT1G64280.1	12383081
AT5G06960.1	VIT_11s0016g01990.t01	AT1G64280.1	15634206
AT5G06960.1	VIT_08s0007g05740.t01	AT2G41370.1	21798944
AT5G06960.1	VIT_01s0146g00220.t01	AT3G02000.1	19218396
AT5G06960.1	VIT_13s0084g00660.t01	AT5G06960.1	17098811
AT5G06960.1	VIT_13s0084g00660.t01	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36324	Soybean	nucleus	64.18	90.66
PGSC0003DMT400024428	Potato	nucleus	61.83	89.51
Solyc11g064950.1.1	Tomato	nucleus	61.83	89.51
GSMUA_Achr8P05800_001	Banana	nucleus	62.47	88.25
GSMUA_Achr3P25020_001	Banana	nucleus	61.83	87.35
Os01t0279900-01	Rice	nucleus	60.13	85.71
EES02530	Sorghum	nucleus	59.49	84.55
Os03t0318600-01	Rice	nucleus	59.7	84.08
KXG39494	Sorghum	nucleus	59.7	83.58
TraesCS2B01G113200.2	Wheat	nucleus	59.49	83.04
TraesCS3A01G190700.2	Wheat	nucleus	58.64	82.83
TraesCS3B01G220400.2	Wheat	nucleus	58.64	82.83
TraesCS3D01G194800.2	Wheat	nucleus	58.64	82.83
HORVU3Hr1G042790.4	Barley	nucleus	58.42	82.78
TraesCS2D01G096800.2	Wheat	nucleus	59.28	82.74
HORVU4Hr1G052330.3	Barley	nucleus	58.85	82.63
TraesCS4B01G178600.1	Wheat	nucleus	58.85	82.63
CDY08443	Canola	nucleus	58.21	82.48
TraesCS2A01G097500.2	Wheat	nucleus	59.06	82.44
TraesCS4A01G126300.2	Wheat	nucleus	58.85	82.39
TraesCS4D01G180200.4	Wheat	nucleus	58.85	82.39
KXG36997	Sorghum	nucleus	58.42	82.28
Bra034767.1-P	Field mustard	nucleus	58.0	82.18
Os07t0687700-01	Rice	nucleus	58.42	82.04
Solyc01g008730.2.1	Tomato	nucleus	57.14	81.96
AT5G06950.5	Thale cress	nucleus	57.57	81.82
Zm00001d022542_P002	Maize	nucleus	58.0	81.68
HORVU3Hr1G042830.1	Barley	cytosol, mitochondrion, nucleus, plastid	25.8	81.21
Bra009241.1-P	Field mustard	nucleus	53.3	80.65
Bra038705.1-P	Field mustard	nucleus	57.14	80.24
CDY50562	Canola	nucleus	57.14	80.24
KRG93068	Soybean	nucleus	75.91	80.18
CDY52616	Canola	nucleus	56.93	80.18
VIT_08s0007g05170.t01	Wine grape	nucleus	76.76	79.82
AT5G06960.1	Thale cress	nucleus	56.08	79.7
CDX70053	Canola	nucleus	55.44	79.51
Bra001443.1-P	Field mustard	nucleus	56.08	79.46
CDX73830	Canola	nucleus	56.08	79.46
CDY00762	Canola	nucleus	56.08	79.46
CDX98971	Canola	nucleus	55.44	79.27
PGSC0003DMT400026710	Potato	mitochondrion	29.64	78.98
HORVU2Hr1G016580.5	Barley	nucleus	56.5	78.64
CDY14061	Canola	nucleus	53.73	77.3
Bra028713.1-P	Field mustard	nucleus	53.73	77.3
CDY05010	Canola	nucleus	53.52	76.99
KRH20680	Soybean	nucleus	76.12	76.12
AT3G12250.4	Thale cress	nucleus	57.36	75.77
GSMUA_Achr10P...	Banana	nucleus	73.77	75.71
CDY42138	Canola	nucleus	49.89	72.22
GSMUA_Achr11P...	Banana	nucleus	73.35	71.97
EES03778	Sorghum	nucleus	69.94	70.09
KXG22247	Sorghum	nucleus	49.04	69.28
TraesCS3A01G334100.1	Wheat	nucleus	69.94	69.05
HORVU3Hr1G079010.5	Barley	nucleus	70.15	68.97
Zm00001d008225_P001	Maize	nucleus	61.62	68.81
KRH13334	Soybean	nucleus	72.71	68.61
TraesCS3B01G365100.1	Wheat	nucleus	69.72	68.55
TraesCS3D01G327600.1	Wheat	nucleus	69.51	68.34
Os05t0492000-00	Rice	nucleus	46.91	66.67
Zm00001d028936_P001	Maize	nucleus	54.58	65.47
VIT_01s0011g03230.t01	Wine grape	nucleus	63.11	65.34
Zm00001d043153_P001	Maize	nucleus	57.57	63.98
Zm00001d010658_P001	Maize	nucleus	45.63	62.03
Zm00001d012553_P003	Maize	nucleus	61.83	61.7
TraesCS1A01G096300.1	Wheat	nucleus	43.92	61.49
TraesCS1B01G127400.1	Wheat	nucleus	43.71	60.29
TraesCS1D01G105300.1	Wheat	nucleus	43.5	60.18
Os01t0808100-01	Rice	nucleus	46.48	59.89
VIT_07s0031g01320.t01	Wine grape	nucleus	42.86	57.59
HORVU1Hr1G068220.1	Barley	nucleus	41.15	56.27
VIT_18s0001g04470.t01	Wine grape	nucleus	42.22	54.55
VIT_06s0080g00360.t01	Wine grape	nucleus	47.33	44.4
VIT_08s0007g06160.t01	Wine grape	nucleus	45.63	43.58
HORVU0Hr1G032230.4	Barley	nucleus	32.2	43.02

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100242879	wikigene:100242879	MapMan:15.5.4.1	MapMan:15.5.4.7.1	MapMan:26.8.3.1.2
ProteinID:CBI35106	ProteinID:CBI35106.3	ncoils:Coil	UniProt:D7TX81	EMBL:FN596254	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR004827	InterPro:IPR025422	EntrezGene:LOC100242879	wikigene:LOC100242879	PFAM:PF00170	PFAM:PF14144
ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF244	SMART:SM00338
SUPFAM:SSF57959	TIGR:TC56062	InterPro:TGA_domain	UniParc:UPI0001BE425A	ArrayExpress:VIT_13s0084g00660	EnsemblPlantsGene:VIT_13s0084g00660
EnsemblPlants:VIT_13s0084g00660.t01	unigene:Vvi.1312	RefSeq:XP_002263159	RefSeq:XP_002263159.2	InterPro:bZIP	SEG:seg

Description

No Description!

Coordinates

chr13:-:19780668..19805654

Molecular Weight (calculated)

51597.5 Da

IEP (calculated)

6.439

GRAVY (calculated)

-0.535

Length

469 amino acids

Sequence
(BLAST)

001: MGSIAVRAGA DDEKEAASGM PSFDPQLPVS NALCTEGNSI HSYRVSDFGT LEQSIGFHLE DAVDLSGSTA FNSTKPSGRA VTSDPLHSVT FDKSQNSFDI
101: NPSAARVESQ RLPLQKGQQS NLVSISSGSV ENWGESAMAD ASPRTDISTD VDTDDKVQRF ERGQPASNMA SDSSDRSKDK NDQKTLRRLA QNREAARKSR
201: LRKKAYVQQL ESSRMKLTQL EQELQRARQQ GIFISSSGDQ AHSMSGNGAM AFDVEYARWL EEQNRQINEL RSAVNSHASD AELRVIVDNI MAHYDDIFRL
301: KGVAAKADVF HLLSGMWKTP AERCFLWLGG FRSSELLKLL VNQLEPLTEQ QLLGIGNLQQ SSQQAEDALS QGMEALQQSL AETLSSGSLG SSGSSGNVAN
401: YMGQMAMAMG KLGTLEGFIR QADNLRQQTL QQMHRILTTR QSARALLAIH DYFSRLRALS SLWLARPRE

Best Arabidopsis Sequence Match ( AT3G12250.1 )
(BLAST)

001: MADTSSRTDV STDGDTDHRD LGSDRGHMHA AASDSSDRSK DKLDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSSG
101: DQAHSTGGNG ALAFDAEHSR WLEEKNRQMN ELRSALNAHA GDTELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQVMGINSL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSDNVA SYMGQMAMAM GQLGTLEGFI RQADNLRLQT LQQMLRVLTT
301: RQSARALLAI HDYSSRLRAL SSLWLARPRE

Arabidopsis Description

TGA6TGACG motif-binding factor 6 [Source:UniProtKB/TrEMBL;Acc:F4J8P7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.