Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G096300.1 | Wheat | nucleus | 93.24 | 94.63 |
| TraesCS1D01G105300.1 | Wheat | nucleus | 92.06 | 92.33 |
| HORVU1Hr1G068220.1 | Barley | nucleus | 75.59 | 74.93 |
| Solyc11g064950.1.1 | Tomato | nucleus | 57.94 | 60.8 |
| PGSC0003DMT400024428 | Potato | nucleus | 57.94 | 60.8 |
| TraesCS3B01G220400.2 | Wheat | nucleus | 59.12 | 60.54 |
| KXG22247 | Sorghum | nucleus | 59.12 | 60.54 |
| KRH36324 | Soybean | nucleus | 59.12 | 60.54 |
| Os05t0492000-00 | Rice | nucleus | 58.53 | 60.3 |
| TraesCS4B01G178600.1 | Wheat | nucleus | 58.82 | 59.88 |
| AT5G06950.5 | Thale cress | nucleus | 56.47 | 58.18 |
| Bra034767.1-P | Field mustard | nucleus | 55.88 | 57.4 |
| Solyc01g008730.2.1 | Tomato | nucleus | 55.0 | 57.19 |
| TraesCS2B01G113200.2 | Wheat | nucleus | 56.47 | 57.14 |
| CDY08443 | Canola | nucleus | 55.59 | 57.1 |
| Bra009241.1-P | Field mustard | nucleus | 52.06 | 57.1 |
| Zm00001d010658_P001 | Maize | nucleus | 57.35 | 56.52 |
| CDX98971 | Canola | nucleus | 54.41 | 56.4 |
| CDY50562 | Canola | nucleus | 55.29 | 56.29 |
| Bra038705.1-P | Field mustard | nucleus | 55.29 | 56.29 |
| CDX70053 | Canola | nucleus | 54.12 | 56.27 |
| Bra001443.1-P | Field mustard | nucleus | 54.71 | 56.19 |
| CDY00762 | Canola | nucleus | 54.71 | 56.19 |
| CDX73830 | Canola | nucleus | 54.71 | 56.19 |
| CDY52616 | Canola | nucleus | 55.0 | 56.16 |
| KRH66777 | Soybean | nucleus | 47.65 | 55.86 |
| AT5G06960.1 | Thale cress | nucleus | 54.12 | 55.76 |
| AT3G12250.4 | Thale cress | nucleus | 55.88 | 53.52 |
| Bra028713.1-P | Field mustard | nucleus | 51.18 | 53.37 |
| CDY05010 | Canola | nucleus | 51.18 | 53.37 |
| CDY14061 | Canola | nucleus | 50.88 | 53.07 |
| CDY42138 | Canola | nucleus | 47.94 | 50.31 |
| PGSC0003DMT400026710 | Potato | mitochondrion | 25.59 | 49.43 |
| Solyc10g080780.1.1 | Tomato | cytosol | 37.65 | 47.58 |
| HORVU0Hr1G032230.4 | Barley | nucleus | 49.12 | 47.58 |
| PGSC0003DMT400060922 | Potato | nucleus | 37.06 | 47.01 |
| KRG93068 | Soybean | nucleus | 60.29 | 46.17 |
| VIT_08s0007g05170.t01 | Wine grape | nucleus | 60.0 | 45.23 |
| PGSC0003DMT400060926 | Potato | nucleus | 56.18 | 44.11 |
| VIT_13s0084g00660.t01 | Wine grape | nucleus | 60.29 | 43.71 |
| KRG95103 | Soybean | nucleus | 58.82 | 43.57 |
| TraesCS3B01G365100.1 | Wheat | nucleus | 60.88 | 43.4 |
| KRH66771 | Soybean | nucleus | 58.24 | 43.04 |
| Solyc10g080770.1.1 | Tomato | nucleus | 56.47 | 42.67 |
| KRH20680 | Soybean | nucleus | 58.82 | 42.64 |
| KRH13334 | Soybean | nucleus | 58.53 | 40.04 |
| TraesCS7B01G114300.1 | Wheat | nucleus | 50.88 | 38.62 |
| TraesCS2B01G556600.1 | Wheat | nucleus | 42.06 | 32.87 |
| TraesCS6B01G193200.2 | Wheat | nucleus | 39.12 | 29.04 |
| TraesCS5B01G265300.1 | Wheat | nucleus | 44.12 | 28.52 |
| TraesCS4B01G135000.1 | Wheat | nucleus | 46.18 | 27.74 |
| TraesCS1B01G285800.1 | Wheat | nucleus | 42.35 | 27.38 |
| TraesCS3B01G404800.2 | Wheat | nucleus | 43.53 | 25.83 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | MapMan:15.5.4.7.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR004827 |
| InterPro:IPR025422 | PFAM:PF00170 | PFAM:PF14144 | ScanProsite:PS00036 | PFscan:PS50217 | PFscan:PS51806 |
| PANTHER:PTHR22952 | PANTHER:PTHR22952:SF206 | SMART:SM00338 | SUPFAM:SSF57959 | InterPro:TGA_domain | EnsemblPlantsGene:TraesCS1B01G127400 |
| EnsemblPlants:TraesCS1B01G127400.1 | InterPro:bZIP | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr1B:-:156565663..156567545
Molecular Weight (calculated)
37260.2 Da
IEP (calculated)
6.522
GRAVY (calculated)
-0.357
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MDCASPGGTD TSTDPDLDKN QAFERGHAAA GLTPPDSSHK SNGELGPKTL RRLAQNREAA RRSRLRKKAY VQQLESSGLR LARLEQELQR ARQQGFLIST
101: LGDQPDSENG DAASSFYVEH ARWLEEHHKQ VDELRAAVGA HAGDGDLQAI VDTVMARCDE IFRLKGAAAK ADAFRVLSGT WGTPVERCFL WLGGFRPSEL
201: LMVPTIIVLL ASRLEPLTEK QLDSIDVLRR SSLQAEEALS REMEALRQSV TETVAAAGSS SLSCSDDDCT GQMAVAVGKL GAMEGLLRQA DDLRLRILEE
301: TRRVLTTRQC ARAVLVVTDY FSRMRALSSL WIARPTTGVN
101: LGDQPDSENG DAASSFYVEH ARWLEEHHKQ VDELRAAVGA HAGDGDLQAI VDTVMARCDE IFRLKGAAAK ADAFRVLSGT WGTPVERCFL WLGGFRPSEL
201: LMVPTIIVLL ASRLEPLTEK QLDSIDVLRR SSLQAEEALS REMEALRQSV TETVAAAGSS SLSCSDDDCT GQMAVAVGKL GAMEGLLRQA DDLRLRILEE
301: TRRVLTTRQC ARAVLVVTDY FSRMRALSSL WIARPTTGVN
001: MADTSSRTDV STDGDTDHRD LGSDRGHMHA AASDSSDRSK DKLDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSSG
101: DQAHSTGGNG ALAFDAEHSR WLEEKNRQMN ELRSALNAHA GDTELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQVMGINSL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSDNVA SYMGQMAMAM GQLGTLEGFI RQADNLRLQT LQQMLRVLTT
301: RQSARALLAI HDYSSRLRAL SSLWLARPRE
101: DQAHSTGGNG ALAFDAEHSR WLEEKNRQMN ELRSALNAHA GDTELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQVMGINSL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSDNVA SYMGQMAMAM GQLGTLEGFI RQADNLRLQT LQQMLRVLTT
301: RQSARALLAI HDYSSRLRAL SSLWLARPRE
Arabidopsis Description
TGA6TGACG motif-binding factor 6 [Source:UniProtKB/TrEMBL;Acc:F4J8P7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.