Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038705.1-P | Field mustard | nucleus | 99.4 | 99.1 |
| CDY50562 | Canola | nucleus | 99.4 | 99.1 |
| CDX73830 | Canola | nucleus | 94.29 | 94.86 |
| CDY00762 | Canola | nucleus | 93.69 | 94.26 |
| CDY08443 | Canola | nucleus | 93.39 | 93.96 |
| CDX70053 | Canola | nucleus | 88.29 | 89.91 |
| CDX98971 | Canola | nucleus | 88.29 | 89.63 |
| AT3G12250.4 | Thale cress | nucleus | 94.29 | 88.45 |
| CDY42138 | Canola | nucleus | 80.78 | 83.02 |
| CDY14061 | Canola | nucleus | 78.38 | 80.06 |
| CDY05010 | Canola | nucleus | 78.08 | 79.75 |
| KRH36324 | Soybean | nucleus | 78.38 | 78.61 |
| Os01t0279900-01 | Rice | nucleus | 77.18 | 78.12 |
| GSMUA_Achr8P05800_001 | Banana | nucleus | 77.78 | 78.01 |
| PGSC0003DMT400024428 | Potato | nucleus | 75.68 | 77.78 |
| Solyc11g064950.1.1 | Tomato | nucleus | 75.68 | 77.78 |
| GSMUA_Achr3P25020_001 | Banana | nucleus | 77.48 | 77.71 |
| EES02530 | Sorghum | nucleus | 74.77 | 75.45 |
| TraesCS3A01G190700.2 | Wheat | nucleus | 74.77 | 75.0 |
| TraesCS3B01G220400.2 | Wheat | nucleus | 74.77 | 75.0 |
| HORVU3Hr1G042790.4 | Barley | nucleus | 74.47 | 74.92 |
| TraesCS3D01G194800.2 | Wheat | nucleus | 74.17 | 74.4 |
| Solyc01g008730.2.1 | Tomato | nucleus | 72.97 | 74.31 |
| KXG39494 | Sorghum | nucleus | 74.47 | 74.03 |
| Os03t0318600-01 | Rice | nucleus | 73.87 | 73.87 |
| TraesCS4B01G178600.1 | Wheat | nucleus | 73.57 | 73.35 |
| Os07t0687700-01 | Rice | nucleus | 73.57 | 73.35 |
| HORVU4Hr1G052330.3 | Barley | nucleus | 73.57 | 73.35 |
| TraesCS4A01G126300.2 | Wheat | nucleus | 73.57 | 73.13 |
| TraesCS4D01G180200.4 | Wheat | nucleus | 73.57 | 73.13 |
| KXG36997 | Sorghum | nucleus | 72.67 | 72.67 |
| Zm00001d022542_P002 | Maize | nucleus | 72.37 | 72.37 |
| TraesCS2D01G096800.2 | Wheat | nucleus | 72.67 | 72.02 |
| TraesCS2B01G113200.2 | Wheat | nucleus | 72.67 | 72.02 |
| TraesCS2A01G097500.2 | Wheat | nucleus | 72.67 | 72.02 |
| HORVU3Hr1G042830.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 31.53 | 70.47 |
| PGSC0003DMT400026710 | Potato | mitochondrion | 36.94 | 69.89 |
| HORVU2Hr1G016580.5 | Barley | nucleus | 69.67 | 68.84 |
| KXG22247 | Sorghum | nucleus | 63.36 | 63.55 |
| Os05t0492000-00 | Rice | nucleus | 60.96 | 61.52 |
| Zm00001d010658_P001 | Maize | nucleus | 61.86 | 59.71 |
| Zm00001d008225_P001 | Maize | nucleus | 74.77 | 59.29 |
| KRG93068 | Soybean | nucleus | 78.68 | 59.01 |
| Zm00001d028936_P001 | Maize | nucleus | 66.97 | 57.03 |
| VIT_13s0084g00660.t01 | Wine grape | nucleus | 80.18 | 56.93 |
| GSMUA_Achr10P... | Banana | nucleus | 76.58 | 55.8 |
| KRH20680 | Soybean | nucleus | 78.38 | 55.65 |
| TraesCS1B01G127400.1 | Wheat | nucleus | 56.16 | 55.0 |
| TraesCS1A01G096300.1 | Wheat | nucleus | 55.26 | 54.93 |
| GSMUA_Achr11P... | Banana | nucleus | 78.08 | 54.39 |
| TraesCS1D01G105300.1 | Wheat | nucleus | 54.65 | 53.69 |
| TraesCS3A01G334100.1 | Wheat | nucleus | 76.58 | 53.68 |
| HORVU3Hr1G079010.5 | Barley | nucleus | 76.88 | 53.67 |
| TraesCS3D01G327600.1 | Wheat | nucleus | 76.28 | 53.25 |
| EES03778 | Sorghum | nucleus | 74.77 | 53.21 |
| TraesCS3B01G365100.1 | Wheat | nucleus | 75.98 | 53.04 |
| KRH13334 | Soybean | nucleus | 76.88 | 51.51 |
| HORVU1Hr1G068220.1 | Barley | nucleus | 51.05 | 49.56 |
| Zm00001d043153_P001 | Maize | nucleus | 60.36 | 47.63 |
| CDY71150 | Canola | nucleus, plastid | 28.23 | 47.47 |
| CDX85782 | Canola | nucleus | 50.75 | 46.69 |
| CDX69866 | Canola | nucleus | 50.75 | 46.43 |
| CDY70396 | Canola | mitochondrion | 29.13 | 46.41 |
| CDY40074 | Canola | nucleus | 50.45 | 46.41 |
| CDX95999 | Canola | nucleus | 61.56 | 46.38 |
| CDY38608 | Canola | nucleus | 61.56 | 46.38 |
| CDX68037 | Canola | nucleus | 51.65 | 46.36 |
| CDY08810 | Canola | nucleus | 50.75 | 46.05 |
| Zm00001d012553_P003 | Maize | nucleus | 64.56 | 45.74 |
| CDY21625 | Canola | nucleus | 49.85 | 45.6 |
| CDY41495 | Canola | nucleus | 50.15 | 45.26 |
| CDY14552 | Canola | nucleus | 49.85 | 45.23 |
| CDY37811 | Canola | nucleus | 49.55 | 44.59 |
| CDY33975 | Canola | nucleus | 49.55 | 44.59 |
| CDY38843 | Canola | nucleus | 49.25 | 44.32 |
| CDY38253 | Canola | nucleus | 50.45 | 43.64 |
| CDY18683 | Canola | cytosol | 47.15 | 42.2 |
| CDX81273 | Canola | nucleus | 48.95 | 41.9 |
| CDY22689 | Canola | nucleus | 53.75 | 41.82 |
| Os01t0808100-01 | Rice | nucleus | 45.35 | 41.48 |
| CDX88399 | Canola | nucleus | 52.85 | 40.93 |
| CDX87494 | Canola | nucleus | 54.05 | 40.54 |
| CDY21336 | Canola | nucleus | 50.45 | 40.19 |
| CDY70714 | Canola | nucleus | 42.34 | 40.06 |
| HORVU0Hr1G032230.4 | Barley | nucleus | 41.44 | 39.32 |
| CDY70235 | Canola | nucleus | 42.64 | 39.01 |
| CDX95068 | Canola | nucleus | 54.95 | 38.28 |
| CDX70061 | Canola | nucleus | 51.65 | 38.14 |
| CDX98963 | Canola | nucleus | 51.35 | 37.92 |
| CDX93571 | Canola | nucleus | 54.35 | 37.87 |
| CDY06309 | Canola | nucleus | 54.05 | 37.19 |
| CDY00417 | Canola | mitochondrion | 19.82 | 28.45 |
| CDX79240 | Canola | nucleus | 45.05 | 26.32 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | MapMan:15.5.4.7.1 | MapMan:26.8.3.1.2 | GO:A0A078IRY2 | UniProt:A0A078IRY2 |
| EnsemblPlants:CDY52616 | ProteinID:CDY52616 | ProteinID:CDY52616.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00007398001 |
| InterPro:IPR004827 | InterPro:IPR025422 | PFAM:PF00170 | PFAM:PF14144 | ScanProsite:PS00036 | PFscan:PS50217 |
| PFscan:PS51806 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF244 | SMART:SM00338 | SUPFAM:SSF57959 | InterPro:TGA_domain |
| UniParc:UPI0004EF1FA8 | InterPro:bZIP | SEG:seg | : | : | : |
Description
BnaCnng22950DBnaCnng22950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IRY2]
Coordinates
chrLK033108:-:34146..37018
Molecular Weight (calculated)
37049.9 Da
IEP (calculated)
8.474
GRAVY (calculated)
-0.535
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQLMADTSS RTDVSTDGDT DPRDLSDRGQ TMLAVASDSS GSKDKLDQKT LRRLAQNREA ARKSRLRKKA YVQQLENSRL KLTQLEQELQ RARQQGVFIS
101: SSGDQAHSTG GNGALAFDAE HSRWLEEKNR QMNELRSALN AHAGDAELLI ILDGVMTHYE ELFRIKSNAA KNDVFHLLSG MWKTPAERCF LWLGGFRSSE
201: LLKLLANQLE PVTERQVMGL NSLQQTSQQA EDALSQGMES LQQSLADTLS SGTLGSSSSD NVASYMGQMA MAMGQLGTLE GFIRQADNLR LQTLQQMIRV
301: LTTRQSARAL LAIHDYTSRL RALSSLWLAR PRE
101: SSGDQAHSTG GNGALAFDAE HSRWLEEKNR QMNELRSALN AHAGDAELLI ILDGVMTHYE ELFRIKSNAA KNDVFHLLSG MWKTPAERCF LWLGGFRSSE
201: LLKLLANQLE PVTERQVMGL NSLQQTSQQA EDALSQGMES LQQSLADTLS SGTLGSSSSD NVASYMGQMA MAMGQLGTLE GFIRQADNLR LQTLQQMIRV
301: LTTRQSARAL LAIHDYTSRL RALSSLWLAR PRE
001: MADTSSRTDV STDGDTDHRD LGSDRGHMHA AASDSSDRSK DKLDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSSG
101: DQAHSTGGNG ALAFDAEHSR WLEEKNRQMN ELRSALNAHA GDTELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQVMGINSL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSDNVA SYMGQMAMAM GQLGTLEGFI RQADNLRLQT LQQMLRVLTT
301: RQSARALLAI HDYSSRLRAL SSLWLARPRE
101: DQAHSTGGNG ALAFDAEHSR WLEEKNRQMN ELRSALNAHA GDTELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQVMGINSL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSDNVA SYMGQMAMAM GQLGTLEGFI RQADNLRLQT LQQMLRVLTT
301: RQSARALLAI HDYSSRLRAL SSLWLARPRE
Arabidopsis Description
TGA6TGACG motif-binding factor 6 [Source:UniProtKB/TrEMBL;Acc:F4J8P7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.