CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES00131
EES02530
EES03778
EES05136
EES09234
EES10652
EES16520
KXG22247
KXG36997
KXG39494
OQU88196

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06960.1	EES00131	AT1G64280.1	10659709
AT5G06960.1	EES00131	AT1G64280.1	10662863
AT5G06960.1	EES00131	AT1G64280.1	12383081
AT5G06960.1	EES00131	AT1G64280.1	15634206
AT5G06960.1	EES09234	AT2G41370.1	21798944
AT5G06960.1	EES16520	AT2G41370.1	21798944
AT5G06960.1	OQU88196	AT2G41370.1	21798944
AT5G06960.1	EES05136	AT3G02000.1	19218396
AT5G06960.1	EES10652	AT3G02000.1	19218396
AT5G06960.1	EES02530	AT5G06960.1	17098811
AT5G06960.1	EES03778	AT5G06960.1	17098811
AT5G06960.1	KXG22247	AT5G06960.1	17098811
AT5G06960.1	KXG36997	AT5G06960.1	17098811
AT5G06960.1	KXG39494	AT5G06960.1	17098811
AT5G06960.1	EES02530	AT5G06960.1	21798944
AT5G06960.1	EES03778	AT5G06960.1	21798944
AT5G06960.1	KXG22247	AT5G06960.1	21798944
AT5G06960.1	KXG36997	AT5G06960.1	21798944
AT5G06960.1	KXG39494	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022542_P002	Maize	nucleus	98.5	98.5
Os07t0687700-01	Rice	nucleus	93.69	93.41
TraesCS2D01G096800.2	Wheat	nucleus	93.39	92.56
TraesCS2B01G113200.2	Wheat	nucleus	93.09	92.26
TraesCS2A01G097500.2	Wheat	nucleus	93.09	92.26
KXG39494	Sorghum	nucleus	91.89	91.34
HORVU2Hr1G016580.5	Barley	nucleus	89.19	88.13
Solyc11g064950.1.1	Tomato	nucleus	79.58	81.79
PGSC0003DMT400024428	Potato	nucleus	79.58	81.79
KRH36324	Soybean	nucleus	79.58	79.82
EES02530	Sorghum	nucleus	78.68	79.39
Solyc01g008730.2.1	Tomato	nucleus	76.58	77.98
CDY08443	Canola	nucleus	74.77	75.23
Bra034767.1-P	Field mustard	nucleus	74.47	74.92
AT5G06950.5	Thale cress	nucleus	74.17	74.85
Bra009241.1-P	Field mustard	nucleus	69.37	74.52
PGSC0003DMT400026710	Potato	mitochondrion	39.34	74.43
Bra001443.1-P	Field mustard	nucleus	73.27	73.72
CDX73830	Canola	nucleus	73.27	73.72
CDY00762	Canola	nucleus	73.27	73.72
CDX70053	Canola	nucleus	71.47	72.78
CDY50562	Canola	nucleus	72.97	72.75
Bra038705.1-P	Field mustard	nucleus	72.97	72.75
CDY52616	Canola	nucleus	72.67	72.67
CDX98971	Canola	nucleus	71.47	72.56
AT5G06960.1	Thale cress	nucleus	71.17	71.82
CDY05010	Canola	nucleus	69.97	71.47
CDY14061	Canola	nucleus	69.67	71.17
Bra028713.1-P	Field mustard	nucleus	69.67	71.17
AT3G12250.4	Thale cress	nucleus	73.87	69.3
KXG22247	Sorghum	nucleus	67.87	68.07
KRH66777	Soybean	nucleus	58.86	67.59
CDY42138	Canola	nucleus	64.26	66.05
PGSC0003DMT400060922	Potato	nucleus	51.05	63.43
Solyc10g080780.1.1	Tomato	cytosol	50.45	62.45
KRG93068	Soybean	nucleus	79.28	59.46
VIT_08s0007g05170.t01	Wine grape	nucleus	79.58	58.76
VIT_13s0084g00660.t01	Wine grape	nucleus	82.28	58.42
PGSC0003DMT400060926	Potato	nucleus	75.38	57.97
EES03778	Sorghum	nucleus	79.58	56.62
KRH20680	Soybean	nucleus	78.98	56.08
Solyc10g080770.1.1	Tomato	nucleus	75.38	55.78
KRG95103	Soybean	nucleus	75.68	54.9
KRH66771	Soybean	nucleus	75.38	54.57
KRH13334	Soybean	nucleus	79.28	53.12
GSMUA_Achr8P21670_001	Banana	nucleus	80.18	45.88
OQU76203	Sorghum	nucleus	58.56	42.21
KXG27222	Sorghum	nucleus	51.35	41.91
KXG22976	Sorghum	nucleus	57.36	39.54
KXG20382	Sorghum	cytosol	18.62	39.24
OQU82891	Sorghum	nucleus	57.36	39.14
KXG38496	Sorghum	nucleus	36.04	38.59
OQU89155	Sorghum	nucleus	48.05	37.65
KXG35912	Sorghum	nucleus	53.45	35.6
KXG33735	Sorghum	nucleus	53.45	33.4
OQU79985	Sorghum	golgi, vacuole	49.85	32.17
OQU78097	Sorghum	nucleus	49.85	31.8
OQU76708	Sorghum	nucleus	29.13	31.19
KXG29702	Sorghum	nucleus	43.84	29.92

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	MapMan:26.8.3.1.2	UniProt:A0A1B6QGF4	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009605	GO:GO:0009607	GO:GO:0009987	GO:GO:0042742	GO:GO:0043565	GO:GO:0045893
InterPro:IPR004827	InterPro:IPR025422	EnsemblPlants:KXG36997	ProteinID:KXG36997	ProteinID:KXG36997.1	ProteinID:KXG36998.1
ProteinID:OQU90512.1	ProteinID:OQU90513.1	PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217
PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF220	SMART:SM00338	EnsemblPlantsGene:SORBI_3002G424000	SUPFAM:SSF57959
InterPro:TGA_domain	UniParc:UPI0001C80E3D	InterPro:bZIP	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:77105916..77111030

Molecular Weight (calculated)

37186.3 Da

IEP (calculated)

9.339

GRAVY (calculated)

-0.515

Length

333 amino acids

Sequence
(BLAST)

001: MADASSRTDT SIVLDDIDKN QRMENGSGAV LPSNSSDRSD RSDKPLDQKT MRRLAQNREA ARKSRLRKKA YVQQLESSKL KLAQLEQELQ KARQQGIFIS
101: SSGDQTHAMS GNGALTFDIE YARWLEDQNK QINELRTAVN AHASDSDLRL IVDGIMAHYD EIFKVKGVAA KADVFHILSG MWKTPAERCF LWLGGFRPSE
201: LLKLLANHLE PLTEQQMLGL NNLQQSSQQA EDALSQGMEA LQQSLAETLA GSLGPSGSSG NVANYMGQMA MAMGKLGTLE NFLRQADNLR QQTLHQMQRI
301: LTIRQASRAL LAIHDYFSRL RALSSLWLAR PRE

Best Arabidopsis Sequence Match ( AT3G12250.1 )
(BLAST)

001: MADTSSRTDV STDGDTDHRD LGSDRGHMHA AASDSSDRSK DKLDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSSG
101: DQAHSTGGNG ALAFDAEHSR WLEEKNRQMN ELRSALNAHA GDTELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQVMGINSL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSDNVA SYMGQMAMAM GQLGTLEGFI RQADNLRLQT LQQMLRVLTT
301: RQSARALLAI HDYSSRLRAL SSLWLARPRE

Arabidopsis Description

TGA6TGACG motif-binding factor 6 [Source:UniProtKB/TrEMBL;Acc:F4J8P7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.