Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028713.1-P | Field mustard | nucleus | 87.27 | 88.34 |
| CDY14061 | Canola | nucleus | 87.27 | 88.34 |
| CDY05010 | Canola | nucleus | 86.97 | 88.04 |
| AT5G06950.5 | Thale cress | nucleus | 83.64 | 83.64 |
| AT3G12250.4 | Thale cress | nucleus | 83.64 | 77.75 |
| Solyc11g064950.1.1 | Tomato | nucleus | 76.06 | 77.47 |
| PGSC0003DMT400024428 | Potato | nucleus | 76.06 | 77.47 |
| KRH36324 | Soybean | nucleus | 77.27 | 76.81 |
| GSMUA_Achr8P05800_001 | Banana | nucleus | 76.97 | 76.51 |
| Os01t0279900-01 | Rice | nucleus | 75.45 | 75.68 |
| GSMUA_Achr3P25020_001 | Banana | nucleus | 75.15 | 74.7 |
| EES02530 | Sorghum | nucleus | 74.24 | 74.24 |
| Solyc01g008730.2.1 | Tomato | nucleus | 73.33 | 74.01 |
| TraesCS3B01G220400.2 | Wheat | nucleus | 73.03 | 72.59 |
| TraesCS3A01G190700.2 | Wheat | nucleus | 73.03 | 72.59 |
| HORVU3Hr1G042790.4 | Barley | nucleus | 72.73 | 72.51 |
| KXG39494 | Sorghum | nucleus | 73.33 | 72.24 |
| TraesCS3D01G194800.2 | Wheat | nucleus | 72.42 | 71.99 |
| Os03t0318600-01 | Rice | nucleus | 72.42 | 71.77 |
| Os07t0687700-01 | Rice | nucleus | 72.12 | 71.26 |
| KXG36997 | Sorghum | nucleus | 71.82 | 71.17 |
| Zm00001d022542_P002 | Maize | nucleus | 71.21 | 70.57 |
| TraesCS2B01G113200.2 | Wheat | nucleus | 71.82 | 70.54 |
| TraesCS2D01G096800.2 | Wheat | nucleus | 71.82 | 70.54 |
| HORVU3Hr1G042830.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 31.82 | 70.47 |
| PGSC0003DMT400026710 | Potato | mitochondrion | 37.58 | 70.45 |
| TraesCS2A01G097500.2 | Wheat | nucleus | 71.52 | 70.24 |
| TraesCS4B01G178600.1 | Wheat | nucleus | 70.3 | 69.46 |
| HORVU4Hr1G052330.3 | Barley | nucleus | 70.3 | 69.46 |
| TraesCS4A01G126300.2 | Wheat | nucleus | 70.3 | 69.25 |
| TraesCS4D01G180200.4 | Wheat | nucleus | 70.3 | 69.25 |
| HORVU2Hr1G016580.5 | Barley | nucleus | 69.7 | 68.25 |
| KXG22247 | Sorghum | nucleus | 62.73 | 62.35 |
| Os05t0492000-00 | Rice | nucleus | 61.21 | 61.21 |
| Zm00001d008225_P001 | Maize | nucleus | 74.55 | 58.57 |
| KRG93068 | Soybean | nucleus | 77.27 | 57.43 |
| Zm00001d010658_P001 | Maize | nucleus | 59.39 | 56.81 |
| VIT_13s0084g00660.t01 | Wine grape | nucleus | 79.7 | 56.08 |
| TraesCS1A01G096300.1 | Wheat | nucleus | 56.36 | 55.52 |
| Zm00001d028936_P001 | Maize | nucleus | 65.45 | 55.24 |
| KRH20680 | Soybean | nucleus | 78.48 | 55.22 |
| GSMUA_Achr10P... | Banana | nucleus | 75.76 | 54.7 |
| TraesCS1B01G127400.1 | Wheat | nucleus | 55.76 | 54.12 |
| TraesCS1D01G105300.1 | Wheat | nucleus | 54.85 | 53.39 |
| GSMUA_Achr11P... | Banana | nucleus | 76.67 | 52.93 |
| TraesCS3A01G334100.1 | Wheat | nucleus | 75.15 | 52.21 |
| HORVU3Hr1G079010.5 | Barley | nucleus | 75.45 | 52.2 |
| EES03778 | Sorghum | nucleus | 73.33 | 51.71 |
| TraesCS3B01G365100.1 | Wheat | nucleus | 74.55 | 51.57 |
| TraesCS3D01G327600.1 | Wheat | nucleus | 74.55 | 51.57 |
| KRH13334 | Soybean | nucleus | 77.58 | 51.51 |
| HORVU1Hr1G068220.1 | Barley | nucleus | 53.03 | 51.02 |
| AT5G10030.3 | Thale cress | nucleus | 52.42 | 47.53 |
| Zm00001d043153_P001 | Maize | nucleus | 60.3 | 47.16 |
| AT5G65210.2 | Thale cress | nucleus | 51.52 | 46.2 |
| AT1G77920.1 | Thale cress | nucleus | 51.52 | 46.2 |
| AT1G68640.1 | Thale cress | nucleus | 62.73 | 45.8 |
| Zm00001d012553_P003 | Maize | nucleus | 63.33 | 44.47 |
| AT1G22070.1 | Thale cress | nucleus | 50.61 | 43.49 |
| HORVU0Hr1G032230.4 | Barley | nucleus | 42.73 | 40.17 |
| Os01t0808100-01 | Rice | nucleus | 43.94 | 39.84 |
| AT5G06839.3 | Thale cress | nucleus | 54.55 | 39.13 |
| AT1G08320.4 | Thale cress | nucleus | 54.55 | 37.42 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | MapMan:15.5.4.7.1 | MapMan:26.8.3.1.2 | EntrezGene:830587 | UniProt:A0A178UIF0 |
| ProteinID:AED91089.1 | ProteinID:AED91090.1 | ArrayExpress:AT5G06960 | EnsemblPlantsGene:AT5G06960 | RefSeq:AT5G06960 | TAIR:AT5G06960 |
| RefSeq:AT5G06960-TAIR-G | EnsemblPlants:AT5G06960.1 | TAIR:AT5G06960.1 | EMBL:AY058830 | EMBL:AY143864 | Unigene:At.5408 |
| ProteinID:BAB11154.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009719 |
| GO:GO:0009814 | GO:GO:0009863 | GO:GO:0009987 | GO:GO:0042802 | GO:GO:0043565 | InterPro:IPR004827 |
| InterPro:IPR025422 | RefSeq:NP_196313.1 | RefSeq:NP_974745.1 | ProteinID:OAO93583.1 | Symbol:OBF5 | PFAM:PF00170 |
| PFAM:PF14144 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| ScanProsite:PS00036 | PFscan:PS50217 | PFscan:PS51806 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF244 | UniProt:Q39163 |
| SMART:SM00338 | SUPFAM:SSF57959 | InterPro:TGA_domain | UniParc:UPI00000AC218 | EMBL:X69900 | InterPro:bZIP |
| SEG:seg | : | : | : | : | : |
Description
TGA5TGA5 [Source:UniProtKB/TrEMBL;Acc:A0A178UIF0]
Coordinates
chr5:+:2154746..2157719
Molecular Weight (calculated)
36892.6 Da
IEP (calculated)
8.921
GRAVY (calculated)
-0.611
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDTSPRTSV STDGDTDHNN LMFDEGHLGI GASDSSDRSK SKMDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSSG
101: DQAHSTAGDG AMAFDVEYRR WQEDKNRQMK ELSSAIDSHA TDSELRIIVD GVIAHYEELY RIKGNAAKSD VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LIASQLEPLT EQQSLDINNL QQSSQQAEDA LSQGMDNLQQ SLADTLSSGT LGSSSSGNVA SYMGQMAMAM GKLGTLEGFI RQADNLRLQT YQQMVRLLTT
301: RQSARALLAV HNYTLRLRAL SSLWLARPRE
101: DQAHSTAGDG AMAFDVEYRR WQEDKNRQMK ELSSAIDSHA TDSELRIIVD GVIAHYEELY RIKGNAAKSD VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LIASQLEPLT EQQSLDINNL QQSSQQAEDA LSQGMDNLQQ SLADTLSSGT LGSSSSGNVA SYMGQMAMAM GKLGTLEGFI RQADNLRLQT YQQMVRLLTT
301: RQSARALLAV HNYTLRLRAL SSLWLARPRE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.