Factsheet for AT5G65210.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08810	Canola	nucleus	92.39	92.64
Bra024366.1-P	Field mustard	nucleus	92.39	92.64
CDY14552	Canola	nucleus	91.3	91.55
CDY33975	Canola	nucleus	91.3	90.81
CDY37811	Canola	nucleus	90.76	90.27
Bra031871.1-P	Field mustard	nucleus	90.76	90.27
CDY18683	Canola	cytosol	87.23	86.29
AT5G10030.3	Thale cress	nucleus	84.78	85.71
CDX81273	Canola	nucleus	88.59	83.8
Bra037809.1-P	Field mustard	nucleus	85.33	80.1
VIT_07s0031g01320.t01	Wine grape	nucleus	71.74	75.64
KRG97639	Soybean	nucleus	69.02	70.17
KRH31239	Soybean	nucleus	67.93	68.68
GSMUA_Achr5P16630_001	Banana	nucleus	63.59	64.11
KRH59415	Soybean	nucleus	64.13	63.78
KRH43266	Soybean	nucleus	65.22	63.32
Solyc04g011670.2.1	Tomato	nucleus	63.59	62.57
PGSC0003DMT400033308	Potato	nucleus	58.7	60.67
Solyc04g054320.2.1	Tomato	nucleus	60.87	60.54
GSMUA_AchrUn_...	Banana	nucleus	57.88	60.17
GSMUA_Achr10P...	Banana	nucleus	55.98	58.69
AT1G22070.1	Thale cress	nucleus	60.05	57.55
AT1G77920.1	Thale cress	nucleus	57.34	57.34
Zm00001d016312_P001	Maize	cytosol	14.4	56.99
PGSC0003DMT400016235	Potato	nucleus	58.7	55.1
Bra037374.1-P	Field mustard	nucleus	45.38	53.18
AT5G06950.5	Thale cress	nucleus	46.74	52.12
AT5G06960.1	Thale cress	nucleus	46.2	51.52
Os04t0637000-01	Rice	nucleus	52.45	48.61
AT3G12250.4	Thale cress	nucleus	46.2	47.89
KXG38496	Sorghum	nucleus	39.95	47.27
KXG27222	Sorghum	nucleus	52.17	47.06
KRG92164	Soybean	nucleus	29.08	45.53
Zm00001d026398_P006	Maize	nucleus	50.82	45.39
KRH34622	Soybean	cytosol	27.99	44.59
Zm00001d024160_P003	Maize	nucleus	50.54	43.87
TraesCS2B01G556600.1	Wheat	nucleus	51.36	43.45
TraesCS2A01G526300.1	Wheat	nucleus	49.46	43.44
TraesCS2D01G529000.1	Wheat	nucleus	50.0	43.29
Os08t0176900-01	Rice	nucleus	42.93	40.62
Zm00001d002143_P002	Maize	cytosol	47.28	39.64
Zm00001d041428_P001	Maize	cytosol	16.03	37.82
OQU79985	Sorghum	golgi, vacuole	51.63	36.82
AT1G68640.1	Thale cress	nucleus	45.11	36.73
AT1G08320.4	Thale cress	nucleus	44.29	33.89
AT5G06839.3	Thale cress	nucleus	41.3	33.04
HORVU2Hr1G116090.2	Barley	cytosol	32.88	28.61

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	EntrezGene:836646	UniProt:A0A178UQV2	ProteinID:AED98019.1
ProteinID:AED98020.1	ProteinID:AED98021.1	ProteinID:AED98022.1	ProteinID:AED98023.1	EMBL:AK317142	EMBL:AK317488
ProteinID:ANM70446.1	ArrayExpress:AT5G65210	EnsemblPlantsGene:AT5G65210	RefSeq:AT5G65210	TAIR:AT5G65210	RefSeq:AT5G65210-TAIR-G
EnsemblPlants:AT5G65210.2	TAIR:AT5G65210.2	EMBL:AY087049	EMBL:AY099593	EMBL:AY128838	Unigene:At.20818
UniProt:B9DGG1	ProteinID:BAB11657.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009605	GO:GO:0009607	GO:GO:0009987	GO:GO:0042742
GO:GO:0043565	GO:GO:0044212	InterPro:IPR004827	InterPro:IPR025422	RefSeq:NP_001032147.1	RefSeq:NP_001032148.1
RefSeq:NP_001032149.1	RefSeq:NP_001318881.1	RefSeq:NP_201324.1	RefSeq:NP_851273.1	ProteinID:OAO96416.1	PFAM:PF00170
PFAM:PF14144	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054
PO:PO:0007095	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0009005	PO:PO:0009006	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0020030	PO:PO:0020100	PO:PO:0020137
PO:PO:0025022	PO:PO:0025281	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952
PANTHER:PTHR22952:SF266	UniProt:Q39237	SMART:SM00338	SUPFAM:SSF57959	Symbol:TGA1	InterPro:TGA_domain
UniParc:UPI00000A0502	EMBL:X68053	InterPro:bZIP	:	:	:

Description

TGA1Transcription factor TGA1 [Source:UniProtKB/Swiss-Prot;Acc:Q39237]

Coordinates

chr5:+:26058112..26061157

Molecular Weight (calculated)

42066.0 Da

IEP (calculated)

7.759

GRAVY (calculated)

-0.524

Length

368 amino acids

Sequence
(BLAST)

001: MNSTSTHFVP PRRVGIYEPV HQFGMWGESF KSNISNGTMN TPNHIIIPNN QKLDNNVSED TSHGTAGTPH MFDQEASTSR HPDKIQRRLA QNREAARKSR
101: LRKKAYVQQL ETSRLKLIQL EQELDRARQQ GFYVGNGIDT NSLGFSETMN PGIAAFEMEY GHWVEEQNRQ ICELRTVLHG HINDIELRSL VENAMKHYFE
201: LFRMKSSAAK ADVFFVMSGM WRTSAERFFL WIGGFRPSDL LKVLLPHFDV LTDQQLLDVC NLKQSCQQAE DALTQGMEKL QHTLADCVAA GQLGEGSYIP
301: QVNSAMDRLE ALVSFVNQAD HLRHETLQQM YRILTTRQAA RGLLALGEYF QRLRALSSSW ATRHREPT

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.