Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009233.1-P | Field mustard | cytosol | 57.17 | 93.93 |
| CDX70061 | Canola | nucleus | 91.74 | 93.57 |
| CDX98963 | Canola | nucleus | 91.3 | 93.13 |
| Bra005914.1-P | Field mustard | nucleus | 87.61 | 92.86 |
| CDY71150 | Canola | nucleus, plastid | 38.48 | 89.39 |
| CDY70235 | Canola | nucleus | 70.0 | 88.46 |
| CDY70714 | Canola | nucleus | 64.57 | 84.38 |
| CDY70396 | Canola | mitochondrion | 34.57 | 76.08 |
| PGSC0003DMT400029743 | Potato | nucleus, plastid | 55.22 | 66.84 |
| KRH67029 | Soybean | nucleus | 65.87 | 61.71 |
| KRG95350 | Soybean | nucleus | 65.65 | 61.51 |
| GSMUA_Achr9P27700_001 | Banana | nucleus | 50.0 | 61.33 |
| VIT_08s0007g06160.t01 | Wine grape | nucleus | 65.0 | 60.9 |
| KRH71904 | Soybean | nucleus | 62.61 | 59.5 |
| GSMUA_Achr3P11150_001 | Banana | nucleus | 53.26 | 59.18 |
| Solyc10g080410.1.1 | Tomato | nucleus | 58.26 | 58.39 |
| PGSC0003DMT400060865 | Potato | nucleus | 57.39 | 57.27 |
| Solyc10g078670.1.1 | Tomato | nucleus | 60.22 | 56.88 |
| KRH32997 | Soybean | nucleus | 62.17 | 55.32 |
| AT5G06950.5 | Thale cress | nucleus | 39.57 | 55.15 |
| AT5G06960.1 | Thale cress | nucleus | 39.13 | 54.55 |
| AT3G12250.4 | Thale cress | nucleus | 39.35 | 50.99 |
| Zm00001d020938_P002 | Maize | nucleus | 52.39 | 49.59 |
| KXG35912 | Sorghum | nucleus | 51.96 | 47.8 |
| AT1G77920.1 | Thale cress | nucleus | 36.09 | 45.11 |
| AT1G22070.1 | Thale cress | nucleus | 37.61 | 45.05 |
| GSMUA_Achr9P20200_001 | Banana | plastid | 53.48 | 44.97 |
| Os09t0489500-02 | Rice | nucleus | 51.09 | 44.93 |
| Zm00001d006027_P002 | Maize | nucleus | 49.13 | 44.93 |
| TraesCS5A01G265600.1 | Wheat | nucleus | 50.22 | 44.59 |
| TraesCS5D01G273500.1 | Wheat | nucleus | 50.0 | 44.4 |
| TraesCS5B01G265300.1 | Wheat | nucleus | 50.43 | 44.11 |
| AT5G10030.3 | Thale cress | nucleus | 33.26 | 42.03 |
| AT5G65210.2 | Thale cress | nucleus | 33.04 | 41.3 |
| AT1G08320.4 | Thale cress | nucleus | 43.04 | 41.16 |
| HORVU5Hr1G073410.1 | Barley | nucleus | 50.65 | 41.09 |
| AT1G68640.1 | Thale cress | nucleus | 37.39 | 38.05 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | MapMan:15.5.4.7.1 | EntrezGene:830575 | ProteinID:AED91072.1 | ProteinID:AED91074.1 |
| EMBL:AJ314787 | ArrayExpress:AT5G06839 | EnsemblPlantsGene:AT5G06839 | RefSeq:AT5G06839 | TAIR:AT5G06839 | RefSeq:AT5G06839-TAIR-G |
| EnsemblPlants:AT5G06839.3 | TAIR:AT5G06839.3 | Unigene:At.8517 | ProteinID:BAB11142.1 | ncoils:Coil | UniProt:E3VNM4 |
| GO:GO:0000003 | GO:GO:0002237 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009791 |
| GO:GO:0009908 | GO:GO:0009987 | GO:GO:0042803 | GO:GO:0043565 | GO:GO:0048653 | GO:GO:0071588 |
| EMBL:HQ132742 | InterPro:IPR004827 | InterPro:IPR025422 | RefSeq:NP_001190244.1 | RefSeq:NP_850784.1 | PFAM:PF00170 |
| PFAM:PF14144 | PO:PO:0001078 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009010 |
| PO:PO:0009046 | PO:PO:0025022 | ScanProsite:PS00036 | PFscan:PS50217 | PFscan:PS51806 | PANTHER:PTHR22952 |
| PANTHER:PTHR22952:SF241 | SMART:SM00338 | SUPFAM:SSF57959 | Symbol:TGA10 | InterPro:TGA_domain | UniParc:UPI00005B0D75 |
| InterPro:bZIP | SEG:seg | : | : | : | : |
Description
TGA10Transcription factor TGA10 [Source:UniProtKB/Swiss-Prot;Acc:E3VNM4]
Coordinates
chr5:+:2120472..2126457
Molecular Weight (calculated)
51169.5 Da
IEP (calculated)
7.207
GRAVY (calculated)
-0.564
Length
460 amino acids
Sequence
(BLAST)
(BLAST)
001: MQGHHQNHHQ HLSSSSATSS HGNFMNKDGY DIGEIDPSLF LYLDGQGHHD PPSTAPSPLH HHHTTQNLAM RPPTSTLNIF PSQPMHIEPP PSSTHNTDNT
101: RLVPAAQPSG STRPASDPSM DLTNHSQFHQ PPQGSKSIKK EGNRKGLASS DHDIPKSSDP KTLRRLAQNR EAARKSRLRK KAYVQQLESC RIKLTQLEQE
201: IQRARSQGVF FGGSLIGGDQ QQGGLPIGPG NISSEAAVFD MEYARWLEEQ QRLLNELRVA TQEHLSENEL RMFVDTCLAH YDHLINLKAM VAKTDVFHLI
301: SGAWKTPAER CFLWMGGFRP SEIIKVIVNQ IEPLTEQQIV GICGLQQSTQ EAEEALSQGL EALNQSLSDS IVSDSLPPAS APLPPHLSNF MSHMSLALNK
401: LSALEGFVLQ ADNLRHQTIH RLNQLLTTRQ EARCLLAVAE YFHRLQALSS LWLARPRQDG
101: RLVPAAQPSG STRPASDPSM DLTNHSQFHQ PPQGSKSIKK EGNRKGLASS DHDIPKSSDP KTLRRLAQNR EAARKSRLRK KAYVQQLESC RIKLTQLEQE
201: IQRARSQGVF FGGSLIGGDQ QQGGLPIGPG NISSEAAVFD MEYARWLEEQ QRLLNELRVA TQEHLSENEL RMFVDTCLAH YDHLINLKAM VAKTDVFHLI
301: SGAWKTPAER CFLWMGGFRP SEIIKVIVNQ IEPLTEQQIV GICGLQQSTQ EAEEALSQGL EALNQSLSDS IVSDSLPPAS APLPPHLSNF MSHMSLALNK
401: LSALEGFVLQ ADNLRHQTIH RLNQLLTTRQ EARCLLAVAE YFHRLQALSS LWLARPRQDG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.