Factsheet for HORVU5Hr1G073410.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G265600.1	Wheat	nucleus	88.36	96.72
TraesCS5D01G273500.1	Wheat	nucleus	88.18	96.53
TraesCS5B01G265300.1	Wheat	nucleus	89.07	96.01
Zm00001d020938_P002	Maize	nucleus	69.66	81.28
KXG35912	Sorghum	nucleus	70.02	79.4
Os09t0489500-02	Rice	nucleus	71.08	77.06
Zm00001d006027_P002	Maize	nucleus	66.67	75.15
GSMUA_Achr9P27700_001	Banana	nucleus	38.98	58.93
CDY71150	Canola	nucleus, plastid	20.46	58.59
PGSC0003DMT400029743	Potato	nucleus, plastid	38.45	57.37
GSMUA_Achr3P11150_001	Banana	nucleus	41.8	57.25
Bra009233.1-P	Field mustard	cytosol	26.45	53.57
VIT_08s0007g06160.t01	Wine grape	nucleus	46.38	53.56
KRH67029	Soybean	nucleus	46.21	53.36
KRG95350	Soybean	nucleus	45.86	52.95
KRH71904	Soybean	nucleus	45.15	52.89
CDY70396	Canola	mitochondrion	19.4	52.63
Solyc10g078670.1.1	Tomato	nucleus	45.15	52.57
CDX98963	Canola	nucleus	40.92	51.44
CDX70061	Canola	nucleus	40.92	51.44
CDY70235	Canola	nucleus	32.98	51.37
CDY70714	Canola	nucleus	31.75	51.14
AT5G06839.3	Thale cress	nucleus	41.09	50.65
HORVU3Hr1G042790.4	Barley	nucleus	29.28	50.15
PGSC0003DMT400060865	Potato	nucleus	40.56	49.89
KRH32997	Soybean	nucleus	45.15	49.52
Solyc10g080410.1.1	Tomato	nucleus	39.86	49.24
Bra005914.1-P	Field mustard	nucleus	37.57	49.08
HORVU4Hr1G052330.3	Barley	nucleus	28.4	48.2
HORVU2Hr1G016580.5	Barley	nucleus	28.22	47.48
HORVU3Hr1G042830.1	Barley	cytosol, mitochondrion, nucleus, plastid	12.35	46.98
HORVU4Hr1G025130.10	Barley	nucleus	28.57	44.63
GSMUA_Achr9P20200_001	Banana	plastid	42.68	44.24
HORVU0Hr1G015710.1	Barley	nucleus	35.63	43.91
HORVU5Hr1G053330.5	Barley	nucleus	38.1	42.86
HORVU2Hr1G116130.4	Barley	nucleus	9.88	42.11
HORVU7Hr1G042180.5	Barley	nucleus	26.98	40.58
HORVU1Hr1G068220.1	Barley	nucleus	23.99	39.65
HORVU3Hr1G079010.5	Barley	nucleus	30.86	36.69
HORVU1Hr1G073870.2	Barley	nucleus	31.22	33.84
HORVU0Hr1G032230.4	Barley	nucleus	19.58	31.62
HORVU2Hr1G116090.2	Barley	cytosol	18.69	25.06
HORVU3Hr1G084340.10	Barley	nucleus	22.22	22.14

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	UniProt:A0A287RSH4	ncoils:Coil	GO:GO:0000003
GO:GO:0002237	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009605	GO:GO:0009607	GO:GO:0009791	GO:GO:0009908
GO:GO:0009987	GO:GO:0042803	GO:GO:0043565	GO:GO:0048653	GO:GO:0071588	EnsemblPlantsGene:HORVU5Hr1G073410
EnsemblPlants:HORVU5Hr1G073410.1	InterPro:IPR004827	InterPro:IPR025422	PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036
PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF179	SMART:SM00338	SUPFAM:SSF57959
InterPro:TGA_domain	UniParc:UPI000B4883DD	InterPro:bZIP	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr5H:+:538846239..538855317

Molecular Weight (calculated)

63478.1 Da

IEP (calculated)

7.685

GRAVY (calculated)

-0.630

Length

567 amino acids

Sequence
(BLAST)

001: YVDADTERER ERKKERSCSP PPCVCARVSF RRRRRSASVS LEMMMSEGQG QQQQQEIITQ QHQHQQQQQA LEMDITFGMS SHQHHHAPPS SSSSSSMHAA
101: AASFMSSKEA SGAYDHLGEL DQALFMYLDH GHASTQQEQR QTLNIFPSQP MHVEPSPKGE LGLVLSPAPV GSKMPSGRSS PDHHHHHQQQ QAAAAAMEEL
201: ATGSRRQQQD HHLHLQHQHQ QQQPAFATAE SAGASNRDVK PLTKKEHKRG LSTGERDPKT LRRLAQNREA ARKSRLRKKA YIQQLESSRI RLAQIEQELH
301: SARAQGVLYP GSSLLAEQGI AGKGLGGIDG LSSEAAMFDV EYARWQEEHN RLMYELRAAL QQHLPEGELQ MYVESCLAHH DEVLAIKDAV IKGDVFHLIS
401: GVWRSPAERC FLWLGGFRPS EVIKMVLSHV DPLTEQQIVA VYGLQQSAVQ TEEALSQGLD ALYQSLSDTV VSDALTCCST PNVSNYMGQM GLAVHKLSTL
501: EGVVRQAEKL RQQTLHRLHQ VLTARQMARS LLAVSDYFHR LRVLSSFWVN RNRMAPSDQQ LEAGPHT

Best Arabidopsis Sequence Match ( AT5G06839.3 )
(BLAST)

001: MQGHHQNHHQ HLSSSSATSS HGNFMNKDGY DIGEIDPSLF LYLDGQGHHD PPSTAPSPLH HHHTTQNLAM RPPTSTLNIF PSQPMHIEPP PSSTHNTDNT
101: RLVPAAQPSG STRPASDPSM DLTNHSQFHQ PPQGSKSIKK EGNRKGLASS DHDIPKSSDP KTLRRLAQNR EAARKSRLRK KAYVQQLESC RIKLTQLEQE
201: IQRARSQGVF FGGSLIGGDQ QQGGLPIGPG NISSEAAVFD MEYARWLEEQ QRLLNELRVA TQEHLSENEL RMFVDTCLAH YDHLINLKAM VAKTDVFHLI
301: SGAWKTPAER CFLWMGGFRP SEIIKVIVNQ IEPLTEQQIV GICGLQQSTQ EAEEALSQGL EALNQSLSDS IVSDSLPPAS APLPPHLSNF MSHMSLALNK
401: LSALEGFVLQ ADNLRHQTIH RLNQLLTTRQ EARCLLAVAE YFHRLQALSS LWLARPRQDG

Arabidopsis Description

TGA10Transcription factor TGA10 [Source:UniProtKB/Swiss-Prot;Acc:E3VNM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.