Factsheet for TraesCS5D01G273500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G265600.1	Wheat	nucleus	97.68	97.68
TraesCS5B01G265300.1	Wheat	nucleus	97.88	96.39
HORVU5Hr1G073410.1	Barley	nucleus	96.53	88.18
Zm00001d020938_P002	Maize	nucleus	75.29	80.25
KXG35912	Sorghum	nucleus	75.68	78.4
Os09t0489500-02	Rice	nucleus	76.06	75.33
Zm00001d006027_P002	Maize	nucleus	71.81	73.96
GSMUA_Achr9P27700_001	Banana	nucleus	42.28	58.4
CDY71150	Canola	nucleus, plastid	22.2	58.08
PGSC0003DMT400029743	Potato	nucleus, plastid	41.7	56.84
GSMUA_Achr3P11150_001	Banana	nucleus	45.37	56.76
VIT_08s0007g06160.t01	Wine grape	nucleus	50.19	52.95
Bra009233.1-P	Field mustard	cytosol	28.57	52.86
KRH67029	Soybean	nucleus	50.0	52.75
CDY70396	Canola	mitochondrion	21.24	52.63
KRH71904	Soybean	nucleus	48.84	52.27
Solyc10g078670.1.1	Tomato	nucleus	48.84	51.95
KRG95350	Soybean	nucleus	49.23	51.93
CDY70235	Canola	nucleus	35.91	51.1
CDY70714	Canola	nucleus	34.56	50.85
CDX70061	Canola	nucleus	44.21	50.78
CDX98963	Canola	nucleus	44.21	50.78
AT5G06839.3	Thale cress	nucleus	44.4	50.0
PGSC0003DMT400060865	Potato	nucleus	43.82	49.24
Solyc10g080410.1.1	Tomato	nucleus	43.44	49.02
KRH32997	Soybean	nucleus	48.65	48.74
TraesCS3D01G194800.2	Wheat	nucleus	31.08	48.49
Bra005914.1-P	Field mustard	nucleus	40.35	48.16
TraesCS2D01G096800.2	Wheat	nucleus	30.89	47.62
TraesCS4D01G180200.4	Wheat	nucleus	30.7	47.46
TraesCS5D01G178800.1	Wheat	nucleus	40.93	45.49
GSMUA_Achr9P20200_001	Banana	plastid	45.95	43.51
TraesCS1D01G105300.1	Wheat	nucleus	28.38	43.36
TraesCS6D01G154400.1	Wheat	nucleus	38.03	42.27
TraesCS2D01G529000.1	Wheat	nucleus	29.54	36.0
TraesCS7D01G209800.1	Wheat	nucleus	30.89	35.71
TraesCS3D01G327600.1	Wheat	nucleus	32.63	35.43
TraesCS1D01G276100.2	Wheat	nucleus	33.78	33.27
TraesCS4D01G129900.1	Wheat	nucleus	34.36	33.09
TraesCS3D01G365200.3	Wheat	nucleus	33.59	30.0

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	ncoils:Coil	GO:GO:0000003	GO:GO:0002237
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009605	GO:GO:0009607	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987
GO:GO:0042803	GO:GO:0043565	GO:GO:0048653	GO:GO:0071588	InterPro:IPR004827	InterPro:IPR025422
PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952
PANTHER:PTHR22952:SF179	SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	EnsemblPlantsGene:TraesCS5D01G273500	EnsemblPlants:TraesCS5D01G273500.1
InterPro:bZIP	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5D:-:376437832..376446787

Molecular Weight (calculated)

57831.6 Da

IEP (calculated)

7.060

GRAVY (calculated)

-0.540

Length

518 amino acids

Sequence
(BLAST)

001: MMMSEGQGQQ EIISQQHQQQ QQQQPLEMDI TFGMSSHQHH HAPPSSSSSS SMHAAAASFM SSKEASGVYD HLGELDQALF MYLDHGHAST QQEQRQTLNI
101: FPSQPMHVEP SPKGDLGLVL SPAPVGSKMP SPDHHHHHHQ QQAAAAAMEE LAAGSRRQQQ EHHLHLQHQQ QQPAFATAES AGVSNNKDVK PLTKKEHKRG
201: LSTGERDPKT LRRLAQNREA ARKSRLRKKA YIQQLESSRI RLAQIEQELH SARAQGVLYP GSSLLAEQGI AGKGLGGIDG LSSAEAAMFD VEYARWQEEH
301: NRLMYELRAA LQQHLPEGEL QMYVESCLAH HDEVLAIKDA VIKGDVFHLI SGVWRSPAER CFLWLGGFRP SEVIKMVLSH VDPLTEQQIV AVYGLQQSAV
401: QTEEALSQGL DTLYQALSDT VVSDALTCCS TPNVSNYMGQ MGLAVHKLTT LEGFVRQAEK LRQQMLHRLH QVLTARQMAR SLLAVSDYFH RLRVLSSFWV
501: NRNRMAPQDQ QLEAGPHT

Best Arabidopsis Sequence Match ( AT5G06839.3 )
(BLAST)

001: MQGHHQNHHQ HLSSSSATSS HGNFMNKDGY DIGEIDPSLF LYLDGQGHHD PPSTAPSPLH HHHTTQNLAM RPPTSTLNIF PSQPMHIEPP PSSTHNTDNT
101: RLVPAAQPSG STRPASDPSM DLTNHSQFHQ PPQGSKSIKK EGNRKGLASS DHDIPKSSDP KTLRRLAQNR EAARKSRLRK KAYVQQLESC RIKLTQLEQE
201: IQRARSQGVF FGGSLIGGDQ QQGGLPIGPG NISSEAAVFD MEYARWLEEQ QRLLNELRVA TQEHLSENEL RMFVDTCLAH YDHLINLKAM VAKTDVFHLI
301: SGAWKTPAER CFLWMGGFRP SEIIKVIVNQ IEPLTEQQIV GICGLQQSTQ EAEEALSQGL EALNQSLSDS IVSDSLPPAS APLPPHLSNF MSHMSLALNK
401: LSALEGFVLQ ADNLRHQTIH RLNQLLTTRQ EARCLLAVAE YFHRLQALSS LWLARPRQDG

Arabidopsis Description

TGA10Transcription factor TGA10 [Source:UniProtKB/Swiss-Prot;Acc:E3VNM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.