Factsheet for TraesCS6D01G154400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G165800.1	Wheat	nucleus	97.85	97.85
TraesCS6B01G193200.2	Wheat	nucleus	95.92	97.6
HORVU0Hr1G015710.1	Barley	nucleus	94.42	95.65
KXG29702	Sorghum	nucleus	64.38	61.48
Zm00001d015845_P001	Maize	cytosol	34.55	59.85
Os02t0194900-00	Rice	nucleus	44.42	55.5
Zm00001d015846_P001	Maize	nucleus	22.96	52.97
TraesCS2D01G096800.2	Wheat	nucleus	31.33	43.45
TraesCS4D01G180200.4	Wheat	nucleus	31.12	43.28
TraesCS3D01G194800.2	Wheat	nucleus	30.69	43.07
TraesCS5D01G178800.1	Wheat	nucleus	42.7	42.7
TraesCS1D01G105300.1	Wheat	nucleus	29.4	40.41
TraesCS5D01G273500.1	Wheat	nucleus	42.27	38.03
TraesCS3D01G327600.1	Wheat	nucleus	34.55	33.75
TraesCS7D01G209800.1	Wheat	nucleus	31.33	32.59
TraesCS2D01G529000.1	Wheat	nucleus	29.4	32.24
TraesCS4D01G129900.1	Wheat	nucleus	37.12	32.16
TraesCS1D01G276100.2	Wheat	nucleus	35.19	31.18
TraesCS3D01G365200.3	Wheat	nucleus	37.55	30.17

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR004827
InterPro:IPR025422	PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806
PANTHER:PTHR22952	PANTHER:PTHR22952:SF370	SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	EnsemblPlantsGene:TraesCS6D01G154400
EnsemblPlants:TraesCS6D01G154400.1	InterPro:bZIP	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6D:-:129486153..129495885

Molecular Weight (calculated)

50987.0 Da

IEP (calculated)

7.523

GRAVY (calculated)

-0.500

Length

466 amino acids

Sequence
(BLAST)

001: MGDRPWQQPH EQASCSAHAE MIQASTAATS STHGSIIRKD PGGYEDLAEL DQALFLYINS QDQQSVQEQP HFSSRVHAET LNIFPSRPMH VVAEPSPKAA
101: TSTSNIVAAS SNLKPQRPPS KQSAMTAPGG KATVKREGSG SGGAGTPSTS EHEGPRTPDA KTLRRLAQNR EAARKSRLRK KAYIQNLETS RVRLSQMEQE
201: MQRCSAQGAI LGGGAGIGGL SPEAAWFDGE YARWVDEHDR MMRHLRAAVD AEGVEHDAAA TDGEQLLRQL IDATAAHHVV LAELKSAVAR ADVFHLVSGT
301: WLPAAERCFI WIGGSRPSDL IKVMARHMEP LTEQQAAGMY DVQRWAQERE EALDRELQAT YRSLSDTVSS DALISPYPDT AAYMAHMSLA ISNLSSLEAF
401: VRQADALRLQ TLHRLPQVLT ARQAARCFLA VADYSQRLRA LSSLWLARPR QDQPNQPGAG GRLFHP

Best Arabidopsis Sequence Match ( AT1G08320.3 )
(BLAST)

001: MANHRMSEAT NHNHNHHLPY SLIHGLNNNH PSSGFINQDG SSSFDFGELE EAIVLQGVKY RNEEAKPPLL GGGGGATTLE MFPSWPIRTH QTLPTESSKS
101: GGESSDSGSA NFSGKAESQQ PESPMSSKHH LMLQPHHNNM ANSSSTSGLP STSRTLAPPK PSEDKRKATT SGKQLDAKTL RRLAQNREAA RKSRLRKKAY
201: VQQLESSRIK LSQLEQELQR ARSQGLFMGG CGPPGPNITS GAAIFDMEYG RWLEDDNRHM SEIRTGLQAH LSDNDLRLIV DGYIAHFDEI FRLKAVAAKA
301: DVFHLIIGTW MSPAERCFIW MAGFRPSDLI KILVSQMDLL TEQQLMGIYS LQHSSQQAEE ALSQGLEQLQ QSLIDTLAAS PVIDGMQQMA VALGKISNLE
401: GFIRQADNLR QQTVHQLRRI LTVRQAARCF LVIGEYYGRL RALSSLWLSR PRETLMSDET SCQTTTDLQI VQSSRNHFSN F

Arabidopsis Description

TGA9Transcription factor TGA9 [Source:UniProtKB/Swiss-Prot;Acc:Q93XM6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.