Factsheet for TraesCS1D01G276100.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G285800.1	Wheat	nucleus	98.48	98.48
TraesCS1A01G276600.2	Wheat	nucleus	97.53	97.53
HORVU1Hr1G073870.2	Barley	nucleus	92.4	92.93
Os05t0443900-01	Rice	nucleus	76.05	82.64
Zm00001d038296_P001	Maize	nucleus	72.81	73.8
OQU78097	Sorghum	nucleus	73.19	73.75
TraesCS3D01G365200.3	Wheat	nucleus	67.11	60.86
GSMUA_Achr11P...	Banana	cytosol	25.67	55.79
Solyc11g068370.1.1	Tomato	nucleus	38.4	54.3
PGSC0003DMT400067782	Potato	nucleus	33.08	52.89
GSMUA_Achr11P...	Banana	nucleus	49.24	52.64
TraesCS3D01G194800.2	Wheat	nucleus	32.51	51.51
GSMUA_Achr10P...	Banana	nucleus	45.25	50.42
KRH26635	Soybean	nucleus	46.58	50.2
KRH22685	Soybean	nucleus	46.77	50.2
VIT_06s0080g00360.t01	Wine grape	nucleus	46.96	49.4
Bra031622.1-P	Field mustard	nucleus	39.92	49.07
PGSC0003DMT400018306	Potato	nucleus	45.44	48.98
CDY22689	Canola	nucleus	39.73	48.83
GSMUA_Achr3P22700_001	Banana	nucleus	46.96	48.81
GSMUA_Achr5P26200_001	Banana	nucleus	37.64	48.77
TraesCS2D01G096800.2	Wheat	nucleus	30.99	48.51
Solyc06g074320.2.1	Tomato	nucleus	46.2	48.5
Bra018634.1-P	Field mustard	nucleus	43.54	48.21
CDX95068	Canola	nucleus	43.54	47.91
TraesCS4D01G180200.4	Wheat	nucleus	30.42	47.76
CDX93571	Canola	nucleus	43.16	47.49
AT1G08320.4	Thale cress	nucleus	43.35	47.4
KRH25227	Soybean	nucleus	45.06	47.31
KRH30432	Soybean	nucleus	44.11	47.06
CDY06309	Canola	nucleus	43.16	46.9
TraesCS4D01G129900.1	Wheat	nucleus	44.68	43.68
TraesCS1D01G105300.1	Wheat	nucleus	27.76	43.07
TraesCS3D01G327600.1	Wheat	nucleus	35.55	39.2
TraesCS7D01G209800.1	Wheat	nucleus	30.8	36.16
GSMUA_Achr11P...	Banana	nucleus	20.72	35.28
TraesCS6D01G154400.1	Wheat	nucleus	31.18	35.19
TraesCS5D01G178800.1	Wheat	nucleus	30.04	33.91
TraesCS5D01G273500.1	Wheat	nucleus	33.27	33.78
TraesCS2D01G529000.1	Wheat	nucleus	27.19	33.65

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR004827
InterPro:IPR025422	PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806
PANTHER:PTHR22952	PANTHER:PTHR22952:SF346	SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	EnsemblPlantsGene:TraesCS1D01G276100
EnsemblPlants:TraesCS1D01G276100.2	InterPro:bZIP	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1D:+:372150045..372155270

Molecular Weight (calculated)

58130.8 Da

IEP (calculated)

6.308

GRAVY (calculated)

-0.472

Length

526 amino acids

Sequence
(BLAST)

001: MSRVLPLIAM LQQGEGESSW GMASDRGRAV PFGQALGYGI QGHAPPPANF LRELQPAAAA YFGELEEALI HGTCAAGVDP VMIESDAHTK SAAVAAAAGY
101: LAARPPTLEI FPSWPMSHLQ KPYSGNSQSV GSTDSSSAQN TMSQAELVSP VSMRTDSGQQ QQDQQEALMV TIDDYNYSQG LGAAPATAPS FQQHAGAQDK
201: RKHGSTRKDG KLVDPKTERR LAQNREAARK SRLRKKAYVQ QLETGRIRLQ QIEQELQRGR SQGLLTGGCS APGEMSSAAV MFDMEYARWL DEDNKYMAEI
301: QGALQAQVLD ANLSTIVEDC MRHHDELFHL RAVLARSDVF HLMTGMWATQ SERCFLWMAG FRPSEILKML IPQLDPSTEQ QLLGMCNLQQ SSEQAEEALE
401: QGLKQLHQSL ADAVGAGPLN DGADVANYTG LMALALDRLD NLESFYREAD NLRQQTLHHM RRILTTRQTA RCFVSLGEYH RRLRALSSIW ASRPRENFMM
501: PENVSSTATE FQAIHHQPQQ NQFSGL

Best Arabidopsis Sequence Match ( AT1G08320.1 )
(BLAST)

001: MANHRMSEAT NHNHNHHLPY SLIHGLNNNH PSSGFINQDG SSSFDFGELE EAIVLQGVKY RNEEAKPPLL GGGGGATTLE MFPSWPIRTH QTLPTESSKS
101: GGESSDSGSA NFSGKAESQQ PESPMSSKHH LMLQPHHNNM ANSSSTSGLP STSRTLAPPK PSEDKRKATT SGKQLDAKTL RRLAQNREAA RKSRLRKKAY
201: VQQLESSRIK LSQLEQELQR ARSQGLFMGG CGPPGPNITS GAAIFDMEYG RWLEDDNRHM SEIRTGLQAH LSDNDLRLIV DGYIAHFDEI FRLKAVAAKA
301: DVFHLIIGTW MSPAERCFIW MAGFRPSDLI KILVSQMDLL TEQQLMGIYS LQHSSQQAEE ALSQGLEQLQ QSLIDTLAAS PVIDGMQQMA VALGKISNLE
401: GFIRQADNLR QQTVHQLRRI LTVRQAARCF LVIGEYYGRL RALSSLWLSR PRETLMSDET SCQTTTDLQI VQSSRNHFSN F

Arabidopsis Description

TGA9Transcription factor TGA9 [Source:UniProtKB/Swiss-Prot;Acc:Q93XM6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.