Factsheet for TraesCS7D01G209800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G285600.1
TraesCS2B01G302700.1
TraesCS2D01G284300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68640.1	TraesCS2A01G285600.1	AT3G02000.1	19218396
AT1G68640.1	TraesCS2B01G302700.1	AT3G02000.1	19218396
AT1G68640.1	TraesCS2D01G284300.1	AT3G02000.1	19218396

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G114300.1	Wheat	nucleus	98.88	98.88
TraesCS7A01G207100.1	Wheat	nucleus	97.1	98.19
HORVU7Hr1G042180.5	Barley	nucleus	78.12	92.84
Os06t0265400-01	Rice	nucleus	66.52	77.4
Os10t0566200-00	Rice	extracellular	18.97	72.03
TraesCS3D01G194800.2	Wheat	nucleus	50.0	67.47
Zm00001d037317_P003	Maize	nucleus	60.04	62.27
TraesCS4D01G180200.4	Wheat	nucleus	46.43	62.09
GSMUA_Achr9P15550_001	Banana	nucleus	59.38	62.0
TraesCS2D01G096800.2	Wheat	nucleus	45.98	61.31
Os01t0882200-00	Rice	cytosol, extracellular	19.42	61.27
Zm00001d037316_P008	Maize	cytosol, nucleus, peroxisome, plastid	45.09	59.59
VIT_01s0011g03230.t01	Wine grape	nucleus	59.15	58.5
OQU76203	Sorghum	nucleus	59.6	57.79
CDY38608	Canola	nucleus	52.01	52.71
Bra004329.1-P	Field mustard	nucleus	51.79	52.61
CDX95999	Canola	nucleus	51.79	52.49
KRH35977	Soybean	nucleus	53.12	52.19
KRG90784	Soybean	nucleus	52.9	52.09
Solyc05g009660.2.1	Tomato	nucleus	55.58	51.45
PGSC0003DMT400033741	Potato	nucleus	55.13	51.14
AT1G68640.1	Thale cress	nucleus	51.56	51.11
TraesCS3D01G327600.1	Wheat	nucleus	54.02	50.73
KRH70569	Soybean	nucleus	52.01	49.89
TraesCS1D01G105300.1	Wheat	nucleus	37.5	49.56
KRH75411	Soybean	nucleus	53.12	48.97
TraesCS2D01G529000.1	Wheat	nucleus	35.71	37.65
TraesCS4D01G129900.1	Wheat	nucleus	39.96	33.27
TraesCS6D01G154400.1	Wheat	nucleus	32.59	31.33
TraesCS5D01G273500.1	Wheat	nucleus	35.71	30.89
TraesCS1D01G276100.2	Wheat	nucleus	36.16	30.8
TraesCS5D01G178800.1	Wheat	nucleus	31.92	30.69
TraesCS3D01G365200.3	Wheat	nucleus	39.06	30.17

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	MapMan:26.8.3.1.2	ncoils:Coil	GO:GO:0000003
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009791	GO:GO:0009908
GO:GO:0009909	GO:GO:0009987	GO:GO:0043565	InterPro:IPR004827	InterPro:IPR025422	PFAM:PF07716
PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF371
SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	EnsemblPlantsGene:TraesCS7D01G209800	EnsemblPlants:TraesCS7D01G209800.1	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7D:-:167584937..167588111

Molecular Weight (calculated)

48440.6 Da

IEP (calculated)

7.832

GRAVY (calculated)

-0.301

Length

448 amino acids

Sequence
(BLAST)

001: MHHHPGPFHV FRAERGVTAG YHHHIGDGAA QLPPELLHHP RSPNPSSKSS SNVTVANFPS LASPHGVVGS LGMAAPGMAF AAAEAGRFCM PRAAAQQLEN
101: WGDSLSGIVV TSPLTETSTD LDDSGDKHHA LMGGGGAGAG AGGGAHSQRR VGCADSSERT GDEKTARRLA QNREAARKSR IRKKAYLAQL ENSRSKLTHL
201: EQELQRARQQ GIFIAGGGSG DCSSGGALAF DLEYARWLDD HQRHINNLRV AVIADMGDDE LRILVESVLL HYDEFFRLKN LATKSDVFHV LSGMWMSPAE
301: RFFMWLGGFR SSEILKVLAS HLEPLTDQQL MGICNLQQSS QQAEDALSQG MEALQQALSE TLAAAAGAGP LAGAGNVTNY MGQMAIAMGK LSTLENFLRQ
401: GDLLRQQTLQ QMHRILTTRQ AARALLVISD YFSRLRALSS LWLARPRD

Best Arabidopsis Sequence Match ( AT1G68640.1 )
(BLAST)

001: MQSSFKTVPF TPDFYSQSSY FFRGDSCLEE FHQPVNGFHH EEAIDLSPNV TIASANLHYT TFDTVMDCGG GGGGGLRERL EGGEEECLDT GQLVYQKGTR
101: LVGGGVGEVN SSWCDSVSAM ADNSQHTDTS TDIDTDDKTQ LNGGHQGMLL ATNCSDQSNV KSSDQRTLRR LAQNREAARK SRLRKKAYVQ QLENSRIRLA
201: QLEEELKRAR QQGSLVERGV SADHTHLAAG NGVFSFELEY TRWKEEHQRM INDLRSGVNS QLGDNDLRVL VDAVMSHYDE IFRLKGIGTK VDVFHMLSGM
301: WKTPAERFFM WLGGFRSSEL LKILGNHVDP LTDQQLIGIC NLQQSSQQAE DALSQGMEAL QQSLLETLSS ASMGPNSSAN VADYMGHMAM AMGKLGTLEN
401: FLRQADLLRQ QTLQQLHRIL TTRQAARAFL VIHDYISRLR ALSSLWLARP RD

Arabidopsis Description

PANTranscription factor PERIANTHIA [Source:UniProtKB/Swiss-Prot;Acc:Q9SX27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.