Factsheet for GSMUA_Achr9P15550_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P18710_001
GSMUA_Achr6P23860_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68640.1	GSMUA_Achr10P...	AT3G02000.1	19218396
AT1G68640.1	GSMUA_Achr3P18710_001	AT3G02000.1	19218396
AT1G68640.1	GSMUA_Achr6P23860_001	AT3G02000.1	19218396
AT1G68640.1	GSMUA_AchrUn_...	AT3G02000.1	19218396

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P05800_001	Banana	nucleus	55.48	71.69
GSMUA_Achr3P25020_001	Banana	nucleus	55.48	71.69
Os10t0566200-00	Rice	extracellular	18.88	68.64
Os06t0265400-01	Rice	nucleus	61.54	68.57
HORVU7Hr1G042180.5	Barley	nucleus	55.94	63.66
VIT_01s0011g03230.t01	Wine grape	nucleus	66.43	62.91
TraesCS7D01G209800.1	Wheat	nucleus	62.0	59.38
Os01t0882200-00	Rice	cytosol, extracellular	19.58	59.15
TraesCS7A01G207100.1	Wheat	nucleus	60.84	58.92
TraesCS7B01G114300.1	Wheat	nucleus	61.07	58.48
KRH35977	Soybean	nucleus	61.54	57.89
Solyc05g009660.2.1	Tomato	nucleus	65.03	57.64
KRG90784	Soybean	nucleus	60.84	57.36
PGSC0003DMT400033741	Potato	nucleus	64.34	57.14
GSMUA_Achr10P...	Banana	nucleus	60.61	56.89
Zm00001d037317_P003	Maize	nucleus	56.18	55.79
Bra004329.1-P	Field mustard	nucleus	57.11	55.56
AT1G68640.1	Thale cress	nucleus	58.51	55.53
CDX95999	Canola	nucleus	57.11	55.43
CDY38608	Canola	nucleus	57.11	55.43
GSMUA_Achr11P...	Banana	nucleus	60.61	54.39
Zm00001d037316_P008	Maize	cytosol, nucleus, peroxisome, plastid	42.89	54.28
OQU76203	Sorghum	nucleus	57.11	53.03
KRH70569	Soybean	nucleus	56.88	52.25
GSMUA_Achr5P16630_001	Banana	nucleus	43.82	51.51
KRH75411	Soybean	nucleus	58.04	51.23
GSMUA_AchrUn_...	Banana	nucleus	58.51	51.02
GSMUA_Achr11P...	Banana	cytosol	28.67	50.83
GSMUA_AchrUn_...	Banana	nucleus	41.03	49.72
GSMUA_Achr10P...	Banana	nucleus	39.86	48.72
GSMUA_Achr9P27700_001	Banana	nucleus	41.96	48.0
GSMUA_Achr3P11150_001	Banana	nucleus	42.66	44.2
GSMUA_Achr8P21670_001	Banana	nucleus	58.74	43.3
GSMUA_Achr2P06770_001	Banana	nucleus	44.06	39.54
GSMUA_Achr5P26200_001	Banana	nucleus	36.83	38.92
GSMUA_Achr10P...	Banana	nucleus	42.42	38.56
GSMUA_Achr11P...	Banana	nucleus	41.26	35.98
GSMUA_Achr3P22700_001	Banana	nucleus	40.33	34.19
GSMUA_Achr9P20200_001	Banana	plastid	41.96	32.91
GSMUA_Achr11P...	Banana	nucleus	16.78	23.3

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	MapMan:26.8.3.1.2	ncoils:Coil	GO:GO:0000003
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009791	GO:GO:0009908
GO:GO:0009909	GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr9G15550_001	EnsemblPlants:GSMUA_Achr9P15550_001	EnsemblPlants:GSMUA_Achr9T15550_001
InterPro:IPR004827	InterPro:IPR025422	UniProt:M0U0L3	PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036
PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF372	SMART:SM00338	SUPFAM:SSF57959
InterPro:TGA_domain	UniParc:UPI0002957E06	InterPro:bZIP	SEG:seg	:	:

Description

Transcription factor HBP-1b(c1) (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr9G15550_001]

Coordinates

chr9:+:10262940..10268291

Molecular Weight (calculated)

47374.5 Da

IEP (calculated)

8.473

GRAVY (calculated)

-0.286

Length

429 amino acids

Sequence
(BLAST)

001: MYSSHLYRGE QAPSGFNIGD AVLDLTRSPI LSPKSSSNLT AVNSSPLHLH FGAINHASMA SLDVAAPTAA AATHVDAGRM AFSRGQIENW GDSAMVVSSP
101: RTDTSTDVEI EDRTKMFGGV QQGAIICADS SAMSKGKAGE QKTLRRLAQN REAARKSRLR KKAYVQQLEN SRVKLIQLEQ VLQRARQQGI LIASGFMGDH
201: SYSIGGNGAL AFDLEYARWL EDHQRRINDL RSALNSQVND DELRLTVETF MGHYDEVFRL KSIGIKSDVF HILSGMWTTP AERCFMWLGG FRSSELLKIL
301: VSHLEPLTDQ QLMGLCNLQH SSQQAEDALS QGMEALQQSL SETLASASLV PAGGADNVSN YMGQMTIAMG KLSTLENFLR QADLLRQQTL QQMHRILTTR
401: QAARALLTIS DYFSRLRALS SLWLARPRD

Best Arabidopsis Sequence Match ( AT1G68640.1 )
(BLAST)

001: MQSSFKTVPF TPDFYSQSSY FFRGDSCLEE FHQPVNGFHH EEAIDLSPNV TIASANLHYT TFDTVMDCGG GGGGGLRERL EGGEEECLDT GQLVYQKGTR
101: LVGGGVGEVN SSWCDSVSAM ADNSQHTDTS TDIDTDDKTQ LNGGHQGMLL ATNCSDQSNV KSSDQRTLRR LAQNREAARK SRLRKKAYVQ QLENSRIRLA
201: QLEEELKRAR QQGSLVERGV SADHTHLAAG NGVFSFELEY TRWKEEHQRM INDLRSGVNS QLGDNDLRVL VDAVMSHYDE IFRLKGIGTK VDVFHMLSGM
301: WKTPAERFFM WLGGFRSSEL LKILGNHVDP LTDQQLIGIC NLQQSSQQAE DALSQGMEAL QQSLLETLSS ASMGPNSSAN VADYMGHMAM AMGKLGTLEN
401: FLRQADLLRQ QTLQQLHRIL TTRQAARAFL VIHDYISRLR ALSSLWLARP RD

Arabidopsis Description

PANTranscription factor PERIANTHIA [Source:UniProtKB/Swiss-Prot;Acc:Q9SX27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.