Factsheet for GSMUA_Achr2P06770_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	32.43	64.05
Zm00001d023424_P001	Maize	nucleus	40.59	62.58
GSMUA_Achr11P...	Banana	nucleus	62.97	61.18
GSMUA_Achr10P...	Banana	nucleus	59.62	60.38
HORVU4Hr1G025130.10	Barley	nucleus	44.98	59.23
GSMUA_Achr8P05800_001	Banana	nucleus	41.0	59.04
Solyc11g068370.1.1	Tomato	nucleus	45.19	58.06
GSMUA_Achr3P25020_001	Banana	nucleus	40.17	57.83
VIT_06s0080g00360.t01	Wine grape	nucleus	60.04	57.4
PGSC0003DMT400067782	Potato	nucleus	38.91	56.53
GSMUA_Achr3P22700_001	Banana	nucleus	59.83	56.52
Solyc06g074320.2.1	Tomato	nucleus	59.2	56.49
GSMUA_Achr5P26200_001	Banana	nucleus	47.7	56.16
PGSC0003DMT400018306	Potato	nucleus	57.32	56.15
KRH26635	Soybean	nucleus	56.69	55.53
OQU82891	Sorghum	nucleus	55.65	54.51
KRH22685	Soybean	nucleus	55.86	54.49
Zm00001d052543_P001	Maize	nucleus	55.23	54.32
KRH30432	Soybean	nucleus	55.65	53.96
KRH25227	Soybean	nucleus	56.07	53.49
CDY22689	Canola	nucleus	47.49	53.04
Bra031622.1-P	Field mustard	nucleus	47.49	53.04
Os12t0152900-01	Rice	nucleus	54.18	52.97
AT1G08320.4	Thale cress	nucleus	52.93	52.6
Os11t0152700-01	Rice	nucleus	53.14	52.48
Bra018634.1-P	Field mustard	nucleus	52.09	52.42
KXG22976	Sorghum	nucleus	52.93	52.38
CDX95068	Canola	nucleus	51.67	51.67
CDX93571	Canola	nucleus	51.46	51.46
CDY06309	Canola	nucleus	51.46	50.83
GSMUA_Achr9P27700_001	Banana	nucleus	38.7	49.33
GSMUA_Achr5P16630_001	Banana	nucleus	37.03	48.49
GSMUA_Achr3P11150_001	Banana	nucleus	41.0	47.34
TraesCS4D01G129900.1	Wheat	nucleus	52.72	46.84
GSMUA_AchrUn_...	Banana	nucleus	34.52	46.61
TraesCS4A01G183400.2	Wheat	nucleus	52.72	46.58
GSMUA_Achr10P...	Banana	nucleus	33.05	45.01
TraesCS4B01G135000.1	Wheat	nucleus	53.14	44.88
GSMUA_Achr10P...	Banana	nucleus	42.68	44.64
GSMUA_Achr9P15550_001	Banana	nucleus	39.54	44.06
GSMUA_Achr11P...	Banana	nucleus	41.84	41.84
GSMUA_Achr11P...	Banana	nucleus	25.73	39.81
GSMUA_AchrUn_...	Banana	nucleus	40.38	39.23
GSMUA_Achr9P20200_001	Banana	plastid	42.05	36.75
GSMUA_Achr8P21670_001	Banana	nucleus	42.89	35.22

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr2G06770_001
EnsemblPlants:GSMUA_Achr2P06770_001	EnsemblPlants:GSMUA_Achr2T06770_001	InterPro:IPR004827	InterPro:IPR025422	UniProt:M0S5R8	PFAM:PF00170
PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF257
SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI000294B748	InterPro:bZIP	SEG:seg

Description

transcription factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G06770_001]

Coordinates

chr2:-:11484699..11489735

Molecular Weight (calculated)

53103.7 Da

IEP (calculated)

6.364

GRAVY (calculated)

-0.513

Length

478 amino acids

Sequence
(BLAST)

001: MENQSAGETG LSESGPSSRP MTHGVNGITP SATNFFDQEG AAYFGGLEEA LMHGVAGIRS DEERKSLFAS RPPTLEIFPS WPMRFQQIPK WNSQPEESAD
101: SGSVQNTISQ LDSESPVSRK ASSEQSEEQQ QGTMAGDGAP NQQLRTQEKV RIHVRNVVGG SSSEKDGKVL DAKTLRRLAQ NREAARKSRL RKKAYIQQLE
201: SSRIKLTQLE QDLQRARAQG LFLGGGSAGD TISSVFDMEY SRWLEENYKK MMELRGGLQA HRQDGDLRVT VDECLALYDE LFQLKATAAR SDVFHVLTGL
301: WTTPAERCFL WMGGFRPSEL LKIVLPQLDP LTEQQVAGIC SLQQSCQQAE EALSQGLEQF LRSLADTVTG DSLVESSSTG NYMSQMAIAL GKLANLEGFL
401: RQADNLRQQT LHQMHRILTI RQAARCFLAI GEYHSRLRAL SSLWASRPRE NSINESAMPL TADLQIVHQP LQSHFPAF

Best Arabidopsis Sequence Match ( AT1G08320.3 )
(BLAST)

001: MANHRMSEAT NHNHNHHLPY SLIHGLNNNH PSSGFINQDG SSSFDFGELE EAIVLQGVKY RNEEAKPPLL GGGGGATTLE MFPSWPIRTH QTLPTESSKS
101: GGESSDSGSA NFSGKAESQQ PESPMSSKHH LMLQPHHNNM ANSSSTSGLP STSRTLAPPK PSEDKRKATT SGKQLDAKTL RRLAQNREAA RKSRLRKKAY
201: VQQLESSRIK LSQLEQELQR ARSQGLFMGG CGPPGPNITS GAAIFDMEYG RWLEDDNRHM SEIRTGLQAH LSDNDLRLIV DGYIAHFDEI FRLKAVAAKA
301: DVFHLIIGTW MSPAERCFIW MAGFRPSDLI KILVSQMDLL TEQQLMGIYS LQHSSQQAEE ALSQGLEQLQ QSLIDTLAAS PVIDGMQQMA VALGKISNLE
401: GFIRQADNLR QQTVHQLRRI LTVRQAARCF LVIGEYYGRL RALSSLWLSR PRETLMSDET SCQTTTDLQI VQSSRNHFSN F

Arabidopsis Description

TGA9Transcription factor TGA9 [Source:UniProtKB/Swiss-Prot;Acc:Q93XM6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.