Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P05800_001 | Banana | nucleus | 64.44 | 92.77 |
| GSMUA_Achr3P25020_001 | Banana | nucleus | 63.18 | 90.96 |
| Solyc11g064950.1.1 | Tomato | nucleus | 57.95 | 85.49 |
| PGSC0003DMT400024428 | Potato | nucleus | 57.95 | 85.49 |
| KRH36324 | Soybean | nucleus | 59.0 | 84.94 |
| GSMUA_Achr10P... | Banana | nucleus | 76.99 | 80.53 |
| Solyc01g008730.2.1 | Tomato | nucleus | 55.02 | 80.43 |
| AT5G06950.5 | Thale cress | nucleus | 55.44 | 80.3 |
| Bra034767.1-P | Field mustard | nucleus | 55.23 | 79.76 |
| CDY08443 | Canola | nucleus | 55.02 | 79.46 |
| Bra009241.1-P | Field mustard | nucleus | 51.26 | 79.03 |
| CDY00762 | Canola | nucleus | 54.18 | 78.25 |
| Bra038705.1-P | Field mustard | nucleus | 54.6 | 78.14 |
| CDY50562 | Canola | nucleus | 54.6 | 78.14 |
| CDY52616 | Canola | nucleus | 54.39 | 78.08 |
| CDX70053 | Canola | nucleus | 53.35 | 77.98 |
| Bra001443.1-P | Field mustard | nucleus | 53.97 | 77.95 |
| CDX73830 | Canola | nucleus | 53.97 | 77.95 |
| CDX98971 | Canola | nucleus | 53.35 | 77.74 |
| PGSC0003DMT400026710 | Potato | mitochondrion | 28.45 | 77.27 |
| AT5G06960.1 | Thale cress | nucleus | 52.93 | 76.67 |
| CDY05010 | Canola | nucleus | 51.05 | 74.85 |
| CDY14061 | Canola | nucleus | 50.84 | 74.54 |
| Bra028713.1-P | Field mustard | nucleus | 50.84 | 74.54 |
| AT3G12250.4 | Thale cress | nucleus | 55.02 | 74.08 |
| VIT_13s0084g00660.t01 | Wine grape | nucleus | 71.97 | 73.35 |
| VIT_08s0007g05170.t01 | Wine grape | nucleus | 68.62 | 72.73 |
| KRH66777 | Soybean | nucleus | 43.51 | 71.72 |
| CDY42138 | Canola | nucleus | 47.7 | 70.37 |
| KRG93068 | Soybean | nucleus | 64.23 | 69.14 |
| PGSC0003DMT400060926 | Potato | nucleus | 62.34 | 68.82 |
| KRH20680 | Soybean | nucleus | 65.69 | 66.95 |
| KRG95103 | Soybean | nucleus | 64.02 | 66.67 |
| Solyc10g080770.1.1 | Tomato | nucleus | 62.55 | 66.44 |
| KRH66771 | Soybean | nucleus | 63.81 | 66.3 |
| PGSC0003DMT400060922 | Potato | nucleus | 35.98 | 64.18 |
| GSMUA_AchrUn_... | Banana | nucleus | 64.85 | 63.01 |
| Solyc10g080780.1.1 | Tomato | cytosol | 35.36 | 62.83 |
| KRH13334 | Soybean | nucleus | 65.27 | 62.78 |
| GSMUA_Achr9P15550_001 | Banana | nucleus | 54.39 | 60.61 |
| GSMUA_Achr8P21670_001 | Banana | nucleus | 71.76 | 58.93 |
| GSMUA_Achr5P16630_001 | Banana | nucleus | 42.05 | 55.07 |
| GSMUA_AchrUn_... | Banana | nucleus | 39.33 | 53.11 |
| GSMUA_Achr11P... | Banana | cytosol | 26.57 | 52.48 |
| GSMUA_Achr10P... | Banana | nucleus | 38.28 | 52.14 |
| GSMUA_Achr9P27700_001 | Banana | nucleus | 38.08 | 48.53 |
| GSMUA_Achr3P11150_001 | Banana | nucleus | 39.33 | 45.41 |
| GSMUA_Achr5P26200_001 | Banana | nucleus | 36.82 | 43.35 |
| GSMUA_Achr2P06770_001 | Banana | nucleus | 41.84 | 41.84 |
| GSMUA_Achr10P... | Banana | nucleus | 41.21 | 41.74 |
| GSMUA_Achr11P... | Banana | nucleus | 42.05 | 40.85 |
| GSMUA_Achr3P22700_001 | Banana | nucleus | 40.59 | 38.34 |
| GSMUA_Achr9P20200_001 | Banana | plastid | 39.12 | 34.19 |
| GSMUA_Achr11P... | Banana | nucleus | 16.74 | 25.89 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | MapMan:15.5.4.7.1 | MapMan:26.8.3.1.2 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSMUA_Achr11G25140_001 | EnsemblPlants:GSMUA_Achr11P25140_001 | EnsemblPlants:GSMUA_Achr11T25140_001 | InterPro:IPR004827 | InterPro:IPR025422 | UniProt:M0RV94 |
| PFAM:PF00170 | PFAM:PF14144 | ScanProsite:PS00036 | PFscan:PS50217 | PFscan:PS51806 | PANTHER:PTHR22952 |
| PANTHER:PTHR22952:SF244 | SMART:SM00338 | SUPFAM:SSF57959 | InterPro:TGA_domain | UniParc:UPI000295B487 | InterPro:bZIP |
| SEG:seg | : | : | : | : | : |
Description
Transcription factor HBP-1b(c1) (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr11G25140_001]
Coordinates
chr11:+:24356857..24371784
Molecular Weight (calculated)
53027.6 Da
IEP (calculated)
7.885
GRAVY (calculated)
-0.472
Length
478 amino acids
Sequence
(BLAST)
(BLAST)
001: MLNHNRVHVL KCLQYEPGFP YSKSNCMHTC TASDCFDFFI SSTEENTTHP SRVSDFGLLE QSTVFHIGAA SDIRRGEIYL AASVKQSGQT FTSNISQSGV
101: LSNPLASSGT TPAVRVEPLT SPQQKGQQPK LVSFSSSQFE NWGESTMADA SPRTDTSTDV DTDDKNQRSE RGQLAAIAAS DSSDRSKDKT LDQKTLRRLA
201: QNREAARKSR LRKKAYVQQL ESSRLKLTQL EQELQRARQQ GIFISSSGDQ THAMGGNGAL AFDVEYARWL DDHNRQISEL RTAVNAHASE NDLRVIVDGI
301: MTHYEEIFRL KGVAAKADVF HILSGMWKTP AERCFLWLGG FRSSELLKLL VNQLEPLTEQ QLMGICNLQQ SSQQAEDALS QGMEALQQSL AETLAGSLGP
401: SGSTGNVANY MGQMAMAMGK LGTLETFLRQ ADNLRQQTLQ QMIRILTTRQ SARALLAISD YFSRLRALSS LWLARPRE
101: LSNPLASSGT TPAVRVEPLT SPQQKGQQPK LVSFSSSQFE NWGESTMADA SPRTDTSTDV DTDDKNQRSE RGQLAAIAAS DSSDRSKDKT LDQKTLRRLA
201: QNREAARKSR LRKKAYVQQL ESSRLKLTQL EQELQRARQQ GIFISSSGDQ THAMGGNGAL AFDVEYARWL DDHNRQISEL RTAVNAHASE NDLRVIVDGI
301: MTHYEEIFRL KGVAAKADVF HILSGMWKTP AERCFLWLGG FRSSELLKLL VNQLEPLTEQ QLMGICNLQQ SSQQAEDALS QGMEALQQSL AETLAGSLGP
401: SGSTGNVANY MGQMAMAMGK LGTLETFLRQ ADNLRQQTLQ QMIRILTTRQ SARALLAISD YFSRLRALSS LWLARPRE
001: MADTSSRTDV STDGDTDHRD LGSDRGHMHA AASDSSDRSK DKLDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSSG
101: DQAHSTGGNG ALAFDAEHSR WLEEKNRQMN ELRSALNAHA GDTELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQVMGINSL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSDNVA SYMGQMAMAM GQLGTLEGFI RQADNLRLQT LQQMLRVLTT
301: RQSARALLAI HDYSSRLRAL SSLWLARPRE
101: DQAHSTGGNG ALAFDAEHSR WLEEKNRQMN ELRSALNAHA GDTELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQVMGINSL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSDNVA SYMGQMAMAM GQLGTLEGFI RQADNLRLQT LQQMLRVLTT
301: RQSARALLAI HDYSSRLRAL SSLWLARPRE
Arabidopsis Description
TGA6TGACG motif-binding factor 6 [Source:UniProtKB/TrEMBL;Acc:F4J8P7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.