Factsheet for GSMUA_Achr9P27700_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P11150_001	Banana	nucleus	75.47	68.36
PGSC0003DMT400029743	Potato	nucleus, plastid	64.0	63.16
CDY71150	Canola	nucleus, plastid	31.73	60.1
Bra009233.1-P	Field mustard	cytosol	44.0	58.93
GSMUA_Achr8P05800_001	Banana	nucleus	49.6	56.02
GSMUA_Achr3P25020_001	Banana	nucleus	49.33	55.72
CDY70396	Canola	mitochondrion	30.13	54.07
CDY70235	Canola	nucleus	52.0	53.57
CDY70714	Canola	nucleus	49.6	52.84
VIT_08s0007g06160.t01	Wine grape	nucleus	68.8	52.55
KRH67029	Soybean	nucleus	68.53	52.34
KRG95350	Soybean	nucleus	68.27	52.14
CDX70061	Canola	nucleus	61.6	51.22
CDX98963	Canola	nucleus	61.33	51.0
KRH71904	Soybean	nucleus	64.8	50.21
AT5G06839.3	Thale cress	nucleus	61.33	50.0
Solyc10g078670.1.1	Tomato	nucleus	63.47	48.87
GSMUA_Achr9P20200_001	Banana	plastid	70.67	48.45
Bra005914.1-P	Field mustard	nucleus	55.73	48.16
Zm00001d020938_P002	Maize	nucleus	62.4	48.15
GSMUA_Achr11P...	Banana	cytosol	30.93	47.93
KXG35912	Sorghum	nucleus	62.93	47.2
PGSC0003DMT400060865	Potato	nucleus	57.87	47.07
Solyc10g080410.1.1	Tomato	nucleus	57.6	47.06
GSMUA_Achr10P...	Banana	nucleus	44.0	47.01
KRH32997	Soybean	nucleus	64.8	47.0
GSMUA_Achr5P16630_001	Banana	nucleus	45.07	46.3
GSMUA_AchrUn_...	Banana	nucleus	43.47	46.05
Zm00001d006027_P002	Maize	nucleus	59.73	44.53
Os09t0489500-02	Rice	nucleus	61.33	43.98
TraesCS5A01G265600.1	Wheat	nucleus	58.67	42.47
TraesCS5D01G273500.1	Wheat	nucleus	58.4	42.28
TraesCS5B01G265300.1	Wheat	nucleus	58.93	42.02
GSMUA_Achr9P15550_001	Banana	nucleus	48.0	41.96
GSMUA_Achr10P...	Banana	nucleus	49.87	40.92
HORVU5Hr1G073410.1	Barley	nucleus	58.93	38.98
GSMUA_Achr2P06770_001	Banana	nucleus	49.33	38.7
GSMUA_Achr11P...	Banana	nucleus	48.53	38.08
GSMUA_Achr10P...	Banana	nucleus	47.2	37.5
GSMUA_Achr5P26200_001	Banana	nucleus	40.53	37.44
GSMUA_AchrUn_...	Banana	nucleus	46.93	35.77
GSMUA_Achr11P...	Banana	nucleus	46.4	35.37
GSMUA_Achr3P22700_001	Banana	nucleus	46.67	34.59
GSMUA_Achr8P21670_001	Banana	nucleus	48.53	31.27
GSMUA_Achr11P...	Banana	nucleus	18.67	22.65

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr9G27700_001
EnsemblPlants:GSMUA_Achr9P27700_001	EnsemblPlants:GSMUA_Achr9T27700_001	InterPro:IPR004827	InterPro:IPR025422	UniProt:M0U427	PFAM:PF00170
PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF241
SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI0002960A67	InterPro:bZIP	SEG:seg

Description

Transcription factor HBP-1b(c38) [Source:GMGC_GENE;Acc:GSMUA_Achr9G27700_001]

Coordinates

chr9:+:31898727..31901294

Molecular Weight (calculated)

42298.0 Da

IEP (calculated)

8.692

GRAVY (calculated)

-0.473

Length

375 amino acids

Sequence
(BLAST)

001: MYADTLNIFP SRPMHVDPRT KGGISSASPA SSGGSKPSEQ AMDLGNAESY LPALPEHGED TKAAILKKEG NRKGISGSDH RRLKTPDPKT SRRLAQNREA
101: ARKSRLRKKA YIQQLESSRI KLSQLEQELQ KARAQGILFG GGAALVDAGV GGFNSDEATF DMEYARWVEE HHRLMCELRR AVQEQSPETE LRMLVDICLA
201: HYDQMMHLKG AVIKSDVFHL ISGMWMTPAE RCFMWMGGFR PSELIKMLLR HIEPLTEQQI LGVCGMQQST QETEEALSQG LEALNKSLSD TIASDELSYT
301: SNMANYMGQM TVAMNKLTTL ESFVREADHL RQQALHRLYQ ILTTRQMARC LLAIAEYFHR LRSLSSLWLS RPRLQ

Best Arabidopsis Sequence Match ( AT5G06839.3 )
(BLAST)

001: MQGHHQNHHQ HLSSSSATSS HGNFMNKDGY DIGEIDPSLF LYLDGQGHHD PPSTAPSPLH HHHTTQNLAM RPPTSTLNIF PSQPMHIEPP PSSTHNTDNT
101: RLVPAAQPSG STRPASDPSM DLTNHSQFHQ PPQGSKSIKK EGNRKGLASS DHDIPKSSDP KTLRRLAQNR EAARKSRLRK KAYVQQLESC RIKLTQLEQE
201: IQRARSQGVF FGGSLIGGDQ QQGGLPIGPG NISSEAAVFD MEYARWLEEQ QRLLNELRVA TQEHLSENEL RMFVDTCLAH YDHLINLKAM VAKTDVFHLI
301: SGAWKTPAER CFLWMGGFRP SEIIKVIVNQ IEPLTEQQIV GICGLQQSTQ EAEEALSQGL EALNQSLSDS IVSDSLPPAS APLPPHLSNF MSHMSLALNK
401: LSALEGFVLQ ADNLRHQTIH RLNQLLTTRQ EARCLLAVAE YFHRLQALSS LWLARPRQDG

Arabidopsis Description

TGA10Transcription factor TGA10 [Source:UniProtKB/Swiss-Prot;Acc:E3VNM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.