CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71150	Canola	nucleus, plastid	52.47	96.46
CDY70714	Canola	nucleus	81.87	84.66
CDX98963	Canola	nucleus	93.68	75.61
CDY70396	Canola	mitochondrion	43.41	75.6
CDX70061	Canola	nucleus	93.41	75.39
AT5G06839.3	Thale cress	nucleus	88.46	70.0
PGSC0003DMT400029743	Potato	nucleus, plastid	58.24	55.79
GSMUA_Achr9P27700_001	Banana	nucleus	53.57	52.0
GSMUA_Achr3P11150_001	Banana	nucleus	54.67	48.07
VIT_08s0007g06160.t01	Wine grape	nucleus	64.56	47.86
KRH67029	Soybean	nucleus	64.29	47.66
KRG95350	Soybean	nucleus	64.01	47.45
KRH71904	Soybean	nucleus	60.16	45.25
CDY42138	Canola	nucleus	40.11	45.06
CDY14061	Canola	nucleus	40.11	44.79
CDY05010	Canola	nucleus	40.11	44.79
CDY08443	Canola	nucleus	40.38	44.41
Solyc10g080410.1.1	Tomato	nucleus	55.77	44.23
CDX98971	Canola	nucleus	39.84	44.21
CDX70053	Canola	nucleus	39.56	44.04
PGSC0003DMT400060865	Potato	nucleus	55.49	43.82
Solyc10g078670.1.1	Tomato	nucleus	58.52	43.74
CDY00762	Canola	nucleus	39.01	42.9
CDX73830	Canola	nucleus	39.01	42.9
CDY50562	Canola	nucleus	39.29	42.81
CDY52616	Canola	nucleus	39.01	42.64
KRH32997	Soybean	nucleus	60.44	42.55
Zm00001d020938_P002	Maize	nucleus	52.2	39.09
KXG35912	Sorghum	nucleus	52.2	38.0
CDY22689	Canola	nucleus	43.68	37.15
CDX68037	Canola	nucleus	37.64	36.93
CDY41495	Canola	nucleus	36.81	36.31
CDY38843	Canola	nucleus	36.81	36.22
TraesCS5A01G265600.1	Wheat	nucleus	51.1	35.91
TraesCS5D01G273500.1	Wheat	nucleus	51.1	35.91
CDY38253	Canola	nucleus	37.91	35.84
TraesCS5B01G265300.1	Wheat	nucleus	51.65	35.74
Zm00001d006027_P002	Maize	nucleus	48.9	35.39
Os09t0489500-02	Rice	nucleus	50.0	34.8
GSMUA_Achr9P20200_001	Banana	plastid	51.92	34.55
CDY40074	Canola	nucleus	33.52	33.7
CDX85782	Canola	nucleus	33.52	33.7
CDY21336	Canola	nucleus	37.91	33.01
HORVU5Hr1G073410.1	Barley	nucleus	51.37	32.98
CDX95068	Canola	nucleus	43.13	32.85
CDX93571	Canola	nucleus	42.86	32.64
CDY06309	Canola	nucleus	43.13	32.44
CDY08810	Canola	nucleus	32.69	32.43
CDX69866	Canola	nucleus	32.14	32.14
CDY21625	Canola	nucleus	32.14	32.14
CDY33975	Canola	nucleus	31.87	31.35
CDY37811	Canola	nucleus	31.87	31.35
CDY14552	Canola	nucleus	31.59	31.34
CDX88399	Canola	nucleus	36.81	31.16
CDX95999	Canola	nucleus	37.36	30.77
CDY38608	Canola	nucleus	37.36	30.77
CDX87494	Canola	nucleus	37.09	30.41
CDX81273	Canola	nucleus	32.42	30.33
CDY18683	Canola	cytosol	30.77	30.11
CDY00417	Canola	mitochondrion	16.48	25.86
CDX79240	Canola	nucleus	36.26	23.16

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	GO:A0A078JUV0	UniProt:A0A078JUV0	EnsemblPlants:CDY70235
ProteinID:CDY70235	ProteinID:CDY70235.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00097387001	InterPro:IPR004827
InterPro:IPR025422	PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806
PANTHER:PTHR22952	PANTHER:PTHR22952:SF241	SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI0004EF453A
InterPro:bZIP	SEG:seg	:	:	:	:

Description

BnaCnng67350DBnaCnng67350D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JUV0]

Coordinates

chrLK041554:-:414..3437

Molecular Weight (calculated)

40465.2 Da

IEP (calculated)

6.849

GRAVY (calculated)

-0.438

Length

364 amino acids

Sequence
(BLAST)

001: IYESYMAENL AMRPPTSTLN IFPSKPMHIE PPPSSSTPNT DNTGLFQAVA PSGSTRPSSE PSMDLTNHSQ FQLPQPSKSI KKEGNRKGLA SSDHDTPKSS
101: DPKTLRRLAQ NREAARKSRL RKKAYVQQLE SCRIKLTQLE QEIQRARSQG VFYGGSLMGG DQQQGGMPIG PCYTSSAEAA VFDMEYTRWL EEQQRLLTEL
201: RVATQEHLAE NELRMFVDTC LAHYDHLINL KAMVAKTDVF HLISGAWKTP AERCFLWMGG FRPSEIIKVI VNQIEPLTEQ QIVGICGLQQ STHEAEEALS
301: QGLEALNQSL SDSIVSDSLS PASAQLPPHL SNFMSHMSLA LNKLSSLEGF VLQVNSNPFL CIYK

Best Arabidopsis Sequence Match ( AT5G06839.3 )
(BLAST)

001: MQGHHQNHHQ HLSSSSATSS HGNFMNKDGY DIGEIDPSLF LYLDGQGHHD PPSTAPSPLH HHHTTQNLAM RPPTSTLNIF PSQPMHIEPP PSSTHNTDNT
101: RLVPAAQPSG STRPASDPSM DLTNHSQFHQ PPQGSKSIKK EGNRKGLASS DHDIPKSSDP KTLRRLAQNR EAARKSRLRK KAYVQQLESC RIKLTQLEQE
201: IQRARSQGVF FGGSLIGGDQ QQGGLPIGPG NISSEAAVFD MEYARWLEEQ QRLLNELRVA TQEHLSENEL RMFVDTCLAH YDHLINLKAM VAKTDVFHLI
301: SGAWKTPAER CFLWMGGFRP SEIIKVIVNQ IEPLTEQQIV GICGLQQSTQ EAEEALSQGL EALNQSLSDS IVSDSLPPAS APLPPHLSNF MSHMSLALNK
401: LSALEGFVLQ ADNLRHQTIH RLNQLLTTRQ EARCLLAVAE YFHRLQALSS LWLARPRQDG

Arabidopsis Description

TGA10Transcription factor TGA10 [Source:UniProtKB/Swiss-Prot;Acc:E3VNM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.