Factsheet for PGSC0003DMT400029743

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 6
plastid 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g078670.1.1	Tomato	nucleus	96.58	75.36
Bra009233.1-P	Field mustard	cytosol	47.63	64.64
GSMUA_Achr9P27700_001	Banana	nucleus	63.16	64.0
CDY71150	Canola	nucleus, plastid	33.16	63.64
GSMUA_Achr3P11150_001	Banana	nucleus	66.84	61.35
PGSC0003DMT400060865	Potato	nucleus	71.58	59.0
VIT_08s0007g06160.t01	Wine grape	nucleus	76.05	58.86
CDY70235	Canola	nucleus	55.79	58.24
KRH67029	Soybean	nucleus	74.47	57.64
KRG95350	Soybean	nucleus	73.95	57.23
CDY70714	Canola	nucleus	52.63	56.82
CDY70396	Canola	mitochondrion	31.05	56.46
PGSC0003DMT400024428	Potato	nucleus	47.89	56.17
CDX98963	Canola	nucleus	66.05	55.65
CDX70061	Canola	nucleus	66.05	55.65
KRH71904	Soybean	nucleus	70.53	55.37
AT5G06839.3	Thale cress	nucleus	66.84	55.22
Bra005914.1-P	Field mustard	nucleus	61.32	53.69
KRH32997	Soybean	nucleus	70.0	51.45
PGSC0003DMT400026710	Potato	mitochondrion	23.68	51.14
PGSC0003DMT400060922	Potato	nucleus	33.95	48.13
Zm00001d020938_P002	Maize	nucleus	60.79	47.53
PGSC0003DMT400067782	Potato	nucleus	40.53	46.81
KXG35912	Sorghum	nucleus	61.58	46.8
GSMUA_Achr9P20200_001	Banana	plastid	63.95	44.42
Zm00001d006027_P002	Maize	nucleus	57.63	43.54
Os09t0489500-02	Rice	nucleus	58.42	42.45
TraesCS5A01G265600.1	Wheat	nucleus	57.11	41.89
TraesCS5D01G273500.1	Wheat	nucleus	56.84	41.7
TraesCS5B01G265300.1	Wheat	nucleus	57.37	41.44
PGSC0003DMT400060926	Potato	nucleus	47.11	41.34
PGSC0003DMT400043651	Potato	nucleus	39.21	41.27
PGSC0003DMT400018306	Potato	nucleus	52.63	40.98
PGSC0003DMT400033308	Potato	nucleus	38.16	40.73
PGSC0003DMT400070884	Potato	nucleus	37.89	39.89
HORVU5Hr1G073410.1	Barley	nucleus	57.37	38.45
PGSC0003DMT400016235	Potato	nucleus	39.21	38.01
PGSC0003DMT400033741	Potato	nucleus	46.32	36.44

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR004827
InterPro:IPR025422	UniProt:M1ATB6	PFAM:PF07716	PFAM:PF14144	EnsemblPlantsGene:PGSC0003DMG400011430	PGSC:PGSC0003DMG400011430
EnsemblPlants:PGSC0003DMT400029743	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF241
SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI00029657A9	InterPro:bZIP	SEG:seg

Description

TGA10 transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400011430]

Coordinates

chr10:+:59001688..59007142

Molecular Weight (calculated)

43166.6 Da

IEP (calculated)

8.591

GRAVY (calculated)

-0.549

Length

380 amino acids

Sequence
(BLAST)

001: MMRPPTLNIF PSQPMHVEPS STKGNAGFVS SGSEKSSEPS IMELSKSKNN VLSTTSGPEP KIPKREWNRK GQNSGSEQNA PKTTDHKTLR RLAQNREAAR
101: KSRIRKKAYI QQLESSRIRL AQLEQELQRA RSQGFHFAGN ALLGGDQGLP NNIGNMTSDA AVFDMEYSRW LEEHHRLMCE LRNAVTEHFP ENDLRIYVEN
201: CVTHYDEMMN LKSMLVKSDV FHLISGMWKT PAERCFIWMG DFRPSELIKI ILSQIEPLTE QQFVGICGLQ QSTQEAEEAL SQGLENLNQS VSDTIVSDAL
301: LANCPQNMAN YMGQMALAIN KLSTIEGFVR QADNLRHQTI HRLHQILTSR QAARCFLAIA EYFHRLRALS SLWVARPRQE

Best Arabidopsis Sequence Match ( AT5G06839.3 )
(BLAST)

001: MQGHHQNHHQ HLSSSSATSS HGNFMNKDGY DIGEIDPSLF LYLDGQGHHD PPSTAPSPLH HHHTTQNLAM RPPTSTLNIF PSQPMHIEPP PSSTHNTDNT
101: RLVPAAQPSG STRPASDPSM DLTNHSQFHQ PPQGSKSIKK EGNRKGLASS DHDIPKSSDP KTLRRLAQNR EAARKSRLRK KAYVQQLESC RIKLTQLEQE
201: IQRARSQGVF FGGSLIGGDQ QQGGLPIGPG NISSEAAVFD MEYARWLEEQ QRLLNELRVA TQEHLSENEL RMFVDTCLAH YDHLINLKAM VAKTDVFHLI
301: SGAWKTPAER CFLWMGGFRP SEIIKVIVNQ IEPLTEQQIV GICGLQQSTQ EAEEALSQGL EALNQSLSDS IVSDSLPPAS APLPPHLSNF MSHMSLALNK
401: LSALEGFVLQ ADNLRHQTIH RLNQLLTTRQ EARCLLAVAE YFHRLQALSS LWLARPRQDG

Arabidopsis Description

TGA10Transcription factor TGA10 [Source:UniProtKB/Swiss-Prot;Acc:E3VNM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.