Factsheet for PGSC0003DMT400033308

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g054320.2.1	Tomato	nucleus	98.31	94.59
VIT_07s0031g01320.t01	Wine grape	nucleus	66.57	67.91
PGSC0003DMT400016235	Potato	nucleus	74.16	67.35
KRG97639	Soybean	nucleus	62.92	61.88
KRH31239	Soybean	nucleus	62.64	61.26
Zm00001d016312_P001	Maize	cytosol	15.73	60.22
AT5G10030.3	Thale cress	nucleus	60.67	59.34
GSMUA_Achr5P16630_001	Banana	nucleus	60.67	59.18
AT5G65210.2	Thale cress	nucleus	60.67	58.7
CDY08810	Canola	nucleus	60.39	58.58
Bra024366.1-P	Field mustard	nucleus	60.39	58.58
CDY14552	Canola	nucleus	59.27	57.49
Bra031871.1-P	Field mustard	nucleus	59.55	57.3
CDY37811	Canola	nucleus	59.55	57.3
CDX85782	Canola	nucleus	58.15	57.18
Bra028604.1-P	Field mustard	nucleus	58.15	57.18
GSMUA_AchrUn_...	Banana	nucleus	56.74	57.06
CDY33975	Canola	nucleus	59.27	57.03
CDX69866	Canola	nucleus	58.15	56.87
Bra009063.1-P	Field mustard	nucleus	58.15	56.87
CDY40074	Canola	nucleus	57.58	56.63
KRH59415	Soybean	nucleus	58.15	55.95
GSMUA_Achr10P...	Banana	nucleus	54.49	55.27
CDY21625	Canola	nucleus	56.46	55.22
KRH43266	Soybean	nucleus	58.71	55.15
CDY18683	Canola	cytosol	57.02	54.57
PGSC0003DMT400043651	Potato	nucleus	54.78	54.02
CDX81273	Canola	nucleus	58.71	53.73
PGSC0003DMT400070884	Potato	nucleus	53.93	53.19
PGSC0003DMT400024428	Potato	nucleus	48.03	52.78
Bra037809.1-P	Field mustard	nucleus	56.18	51.02
PGSC0003DMT400026710	Potato	mitochondrion	22.47	45.45
Os04t0637000-01	Rice	nucleus	50.56	45.34
KXG27222	Sorghum	nucleus	50.0	43.63
Zm00001d026398_P006	Maize	nucleus	49.16	42.48
KXG38496	Sorghum	nucleus	37.08	42.44
Zm00001d041428_P001	Maize	cytosol	18.54	42.31
PGSC0003DMT400060922	Potato	nucleus	31.74	42.16
KRG92164	Soybean	nucleus	27.25	41.28
KRH34622	Soybean	cytosol	26.69	41.13
TraesCS2A01G526300.1	Wheat	nucleus	48.03	40.81
TraesCS2D01G529000.1	Wheat	nucleus	47.75	40.0
Zm00001d024160_P003	Maize	nucleus	47.19	39.62
TraesCS2B01G556600.1	Wheat	nucleus	48.31	39.54
Zm00001d002143_P002	Maize	cytosol	47.19	38.27
Bra037374.1-P	Field mustard	nucleus	33.71	38.22
PGSC0003DMT400029743	Potato	nucleus, plastid	40.73	38.16
PGSC0003DMT400060926	Potato	nucleus	46.07	37.88
PGSC0003DMT400067782	Potato	nucleus	34.83	37.69
Os08t0176900-01	Rice	nucleus	40.17	36.76
OQU79985	Sorghum	golgi, vacuole	49.16	33.91
PGSC0003DMT400033741	Potato	nucleus	45.22	33.33
PGSC0003DMT400060865	Potato	nucleus	41.85	32.32
PGSC0003DMT400018306	Potato	nucleus	41.57	30.33
HORVU2Hr1G116090.2	Barley	cytosol	32.87	27.66

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	ProteinID:AAB31251	ProteinID:AAB31251.2	ProteinID:CAA57894
ProteinID:CAA57894.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR004827	InterPro:IPR025422	UniProt:M1AYX4
PFAM:PF00170	PFAM:PF14144	EnsemblPlantsGene:PGSC0003DMG400012792	PGSC:PGSC0003DMG400012792	EnsemblPlants:PGSC0003DMT400033308	ScanProsite:PS00036
PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF266	EMBL:S73828	SMART:SM00338
SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI0002966292	EMBL:X82544	InterPro:bZIP	SEG:seg

Description

Leucine zipper transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400012792]

Coordinates

chr4:+:52940903..52949164

Molecular Weight (calculated)

40062.0 Da

IEP (calculated)

5.076

GRAVY (calculated)

-0.347

Length

356 amino acids

Sequence
(BLAST)

001: MGICDPIHQI GMWGDFKGSS FPDTLILEVE NCLENEMPIM EKRLENEIEE PSQVTVGTSN RYEPETTKRI DKVRRRLAQN REAARKSRLR KKAYVQQLEN
101: SKLKLLQLEQ ELERNRQQGL CVGDGLDASQ IGCSGTANSG IASFEMEYGH WVEEQDRQTD DLRNALNSQM GEIELRILVE GCLNHYFDLF RLKATAANAD
201: VLYLMSGTWK TSAERFFLWI GGFRPSELLK VLTPHVEPLS DQQIQEVSNL TQSCQQAEDA LSQGMVKLHQ ILAEAVAAGT LGEGIILPQM TATIEKLEAL
301: VRFVNQADHL RQETLLQMSC ILAAHQSAQG LLALGEYFKR LRALSSLWAG RLSEPA

Best Arabidopsis Sequence Match ( AT5G65210.1 )
(BLAST)

001: MNSTSTHFVP PRRVGIYEPV HQFGMWGESF KSNISNGTMN TPNHIIIPNN QKLDNNVSED TSHGTAGTPH MFDQEASTSR HPDKIQRRLA QNREAARKSR
101: LRKKAYVQQL ETSRLKLIQL EQELDRARQQ GFYVGNGIDT NSLGFSETMN PGIAAFEMEY GHWVEEQNRQ ICELRTVLHG HINDIELRSL VENAMKHYFE
201: LFRMKSSAAK ADVFFVMSGM WRTSAERFFL WIGGFRPSDL LKVLLPHFDV LTDQQLLDVC NLKQSCQQAE DALTQGMEKL QHTLADCVAA GQLGEGSYIP
301: QVNSAMDRLE ALVSFVNQAD HLRHETLQQM YRILTTRQAA RGLLALGEYF QRLRALSSSW ATRHREPT

Arabidopsis Description

TGA1Transcription factor TGA1 [Source:UniProtKB/Swiss-Prot;Acc:Q39237]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.