Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85782 | Canola | nucleus | 90.93 | 91.44 |
| Bra028604.1-P | Field mustard | nucleus | 90.93 | 91.44 |
| CDY40074 | Canola | nucleus | 90.38 | 90.88 |
| CDX69866 | Canola | nucleus | 90.11 | 90.11 |
| Bra009063.1-P | Field mustard | nucleus | 90.11 | 90.11 |
| CDY21625 | Canola | nucleus | 87.09 | 87.09 |
| AT5G65210.2 | Thale cress | nucleus | 85.71 | 84.78 |
| VIT_07s0031g01320.t01 | Wine grape | nucleus | 71.7 | 74.79 |
| KRG97639 | Soybean | nucleus | 70.05 | 70.44 |
| KRH31239 | Soybean | nucleus | 69.23 | 69.23 |
| GSMUA_Achr5P16630_001 | Banana | nucleus | 64.29 | 64.11 |
| KRH59415 | Soybean | nucleus | 65.11 | 64.05 |
| KRH43266 | Soybean | nucleus | 66.21 | 63.59 |
| Solyc04g011670.2.1 | Tomato | nucleus | 64.56 | 62.83 |
| GSMUA_AchrUn_... | Banana | nucleus | 59.07 | 60.73 |
| PGSC0003DMT400033308 | Potato | nucleus | 59.34 | 60.67 |
| Solyc04g054320.2.1 | Tomato | nucleus | 61.54 | 60.54 |
| Zm00001d016312_P001 | Maize | cytosol | 15.38 | 60.22 |
| GSMUA_Achr10P... | Banana | nucleus | 55.77 | 57.83 |
| AT1G22070.1 | Thale cress | nucleus | 59.62 | 56.51 |
| PGSC0003DMT400016235 | Potato | nucleus | 60.71 | 56.38 |
| AT1G77920.1 | Thale cress | nucleus | 56.87 | 56.25 |
| AT5G06950.5 | Thale cress | nucleus | 48.08 | 53.03 |
| AT5G06960.1 | Thale cress | nucleus | 47.53 | 52.42 |
| Os04t0637000-01 | Rice | nucleus | 55.22 | 50.63 |
| KXG27222 | Sorghum | nucleus | 54.95 | 49.02 |
| AT3G12250.4 | Thale cress | nucleus | 47.8 | 49.01 |
| Zm00001d026398_P006 | Maize | nucleus | 54.12 | 47.82 |
| TraesCS2A01G526300.1 | Wheat | nucleus | 52.47 | 45.58 |
| KRG92164 | Soybean | nucleus | 29.4 | 45.53 |
| TraesCS2B01G556600.1 | Wheat | nucleus | 54.4 | 45.52 |
| TraesCS2D01G529000.1 | Wheat | nucleus | 53.02 | 45.41 |
| KXG38496 | Sorghum | nucleus | 38.19 | 44.69 |
| KRH34622 | Soybean | cytosol | 28.3 | 44.59 |
| Zm00001d024160_P003 | Maize | nucleus | 49.18 | 42.22 |
| Zm00001d002143_P002 | Maize | cytosol | 49.73 | 41.23 |
| Os08t0176900-01 | Rice | nucleus | 43.96 | 41.13 |
| Zm00001d041428_P001 | Maize | cytosol | 16.76 | 39.1 |
| AT1G68640.1 | Thale cress | nucleus | 47.53 | 38.27 |
| OQU79985 | Sorghum | golgi, vacuole | 50.55 | 35.66 |
| AT5G06839.3 | Thale cress | nucleus | 42.03 | 33.26 |
| AT1G08320.4 | Thale cress | nucleus | 42.86 | 32.43 |
| HORVU2Hr1G116090.2 | Barley | cytosol | 35.44 | 30.5 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | MapMan:15.5.4.7.1 | EntrezGene:830866 | ProteinID:AED91484.1 | ProteinID:AED91485.1 |
| EMBL:AK229351 | ProteinID:ANM68900.1 | ProteinID:ANM68901.1 | ProteinID:ANM68902.1 | ArrayExpress:AT5G10030 | EnsemblPlantsGene:AT5G10030 |
| RefSeq:AT5G10030 | TAIR:AT5G10030 | RefSeq:AT5G10030-TAIR-G | EnsemblPlants:AT5G10030.3 | EMBL:BT024896 | ProteinID:CAB92044.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009409 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR004827 | InterPro:IPR025422 |
| RefSeq:NP_001190270.1 | RefSeq:NP_001330616.1 | RefSeq:NP_001330617.1 | RefSeq:NP_001330618.1 | RefSeq:NP_196565.1 | PFAM:PF00170 |
| PFAM:PF14144 | ScanProsite:PS00036 | PFscan:PS50217 | PFscan:PS51806 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF180 |
| UniProt:Q24JJ3 | UniProt:Q39162 | SMART:SM00338 | SUPFAM:SSF57959 | Symbol:TGA4 | InterPro:TGA_domain |
| UniParc:UPI00000A76BD | EMBL:X69899 | InterPro:bZIP | : | : | : |
Description
TGA4At5g10030 [Source:UniProtKB/TrEMBL;Acc:Q24JJ3]
Coordinates
chr5:-:3137294..3140347
Molecular Weight (calculated)
41753.7 Da
IEP (calculated)
7.189
GRAVY (calculated)
-0.557
Length
364 amino acids
Sequence
(BLAST)
(BLAST)
001: MNTTSTHFVP PRRFEVYEPL NQIGMWEESF KNNGDMYTPG SIIIPTNEKP DSLSEDTSHG TEGTPHKFDQ EASTSRHPDK IQRRLAQNRE AARKSRLRKK
101: AYVQQLETSR LKLIHLEQEL DRARQQGFYV GNGVDTNALS FSDNMSSGIV AFEMEYGHWV EEQNRQICEL RTVLHGQVSD IELRSLVENA MKHYFQLFRM
201: KSAAAKIDVF YVMSGMWKTS AERFFLWIGG FRPSELLKVL LPHFDPLTDQ QLLDVCNLRQ SCQQAEDALS QGMEKLQHTL AESVAAGKLG EGSYIPQMTC
301: AMERLEALVS FVNQADHLRH ETLQQMHRIL TTRQAARGLL ALGEYFQRLR ALSSSWAARQ REPT
101: AYVQQLETSR LKLIHLEQEL DRARQQGFYV GNGVDTNALS FSDNMSSGIV AFEMEYGHWV EEQNRQICEL RTVLHGQVSD IELRSLVENA MKHYFQLFRM
201: KSAAAKIDVF YVMSGMWKTS AERFFLWIGG FRPSELLKVL LPHFDPLTDQ QLLDVCNLRQ SCQQAEDALS QGMEKLQHTL AESVAAGKLG EGSYIPQMTC
301: AMERLEALVS FVNQADHLRH ETLQQMHRIL TTRQAARGLL ALGEYFQRLR ALSSSWAARQ REPT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.