Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015646.1-P | Field mustard | nucleus | 80.71 | 87.61 |
| CDX88399 | Canola | nucleus | 88.04 | 75.35 |
| CDX87494 | Canola | nucleus | 88.04 | 72.97 |
| AT1G22070.1 | Thale cress | nucleus | 76.09 | 72.92 |
| VIT_18s0001g04470.t01 | Wine grape | nucleus | 65.76 | 66.67 |
| GSMUA_Achr5P16630_001 | Banana | nucleus | 61.68 | 62.19 |
| Solyc04g072460.2.1 | Tomato | nucleus | 59.51 | 60.66 |
| Solyc12g056860.1.1 | Tomato | nucleus | 57.07 | 60.34 |
| PGSC0003DMT400070884 | Potato | nucleus | 58.97 | 60.11 |
| PGSC0003DMT400043651 | Potato | nucleus | 58.7 | 59.83 |
| KRH63045 | Soybean | cytosol | 15.22 | 59.57 |
| GSMUA_AchrUn_... | Banana | nucleus | 56.25 | 58.47 |
| GSMUA_Achr10P... | Banana | nucleus | 55.16 | 57.83 |
| AT5G65210.2 | Thale cress | nucleus | 57.34 | 57.34 |
| AT5G10030.3 | Thale cress | nucleus | 56.25 | 56.87 |
| KRH18838 | Soybean | nucleus | 55.98 | 55.68 |
| KRH16629 | Soybean | nucleus | 55.71 | 55.41 |
| KRH53141 | Soybean | nucleus | 51.9 | 53.8 |
| KRH64780 | Soybean | nucleus | 51.9 | 52.76 |
| AT5G06950.5 | Thale cress | nucleus | 46.47 | 51.82 |
| AT5G06960.1 | Thale cress | nucleus | 46.2 | 51.52 |
| Zm00001d016312_P001 | Maize | cytosol | 12.77 | 50.54 |
| Os04t0637000-01 | Rice | nucleus | 52.72 | 48.87 |
| AT3G12250.4 | Thale cress | nucleus | 46.47 | 48.17 |
| KXG27222 | Sorghum | nucleus | 50.82 | 45.83 |
| TraesCS2A01G526300.1 | Wheat | nucleus | 50.0 | 43.91 |
| Zm00001d026398_P006 | Maize | nucleus | 48.64 | 43.45 |
| TraesCS2D01G529000.1 | Wheat | nucleus | 49.73 | 43.06 |
| TraesCS2B01G556600.1 | Wheat | nucleus | 50.0 | 42.3 |
| KXG38496 | Sorghum | nucleus | 34.78 | 41.16 |
| Zm00001d024160_P003 | Maize | nucleus | 47.01 | 40.8 |
| Zm00001d002143_P002 | Maize | cytosol | 46.47 | 38.95 |
| AT1G68640.1 | Thale cress | nucleus | 45.38 | 36.95 |
| AT5G06839.3 | Thale cress | nucleus | 45.11 | 36.09 |
| Zm00001d041428_P001 | Maize | cytosol | 14.95 | 35.26 |
| Os08t0176900-01 | Rice | nucleus | 37.23 | 35.22 |
| AT1G08320.4 | Thale cress | nucleus | 44.29 | 33.89 |
| OQU79985 | Sorghum | golgi, vacuole | 47.01 | 33.53 |
| HORVU2Hr1G116090.2 | Barley | cytosol | 32.61 | 28.37 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | MapMan:15.5.4.7.1 | EntrezGene:844127 | UniProt:A0A178W839 | ProteinID:AAF17682.1 |
| ProteinID:AEE36045.1 | EMBL:AJ315736 | EMBL:AK228861 | ArrayExpress:AT1G77920 | EnsemblPlantsGene:AT1G77920 | RefSeq:AT1G77920 |
| TAIR:AT1G77920 | RefSeq:AT1G77920-TAIR-G | EnsemblPlants:AT1G77920.1 | TAIR:AT1G77920.1 | EMBL:AY057596 | Unigene:At.16522 |
| EMBL:BT010164 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009987 | GO:GO:0042742 | GO:GO:0043565 |
| InterPro:IPR004827 | InterPro:IPR025422 | RefSeq:NP_565162.1 | ProteinID:OAP14629.1 | PFAM:PF00170 | PFAM:PF14144 |
| PO:PO:0000013 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001185 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020030 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00036 | PFscan:PS50217 |
| PFscan:PS51806 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF180 | UniProt:Q0WQ44 | UniProt:Q93ZE2 | SMART:SM00338 |
| SUPFAM:SSF57959 | InterPro:TGA_domain | UniParc:UPI00000A1EDE | InterPro:bZIP | SEG:seg | : |
Description
TGA7Transcription factor TGA7 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZE2]
Coordinates
chr1:+:29298243..29300945
Molecular Weight (calculated)
41915.5 Da
IEP (calculated)
6.381
GRAVY (calculated)
-0.605
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSSSSPTQL ASLRDMGIYE PFQQIVGWGN VFKSDINDHS PNTATSSIIQ VDPRIDDHNN NIKINYDSSH NQIEAEQPSS NDNQDDDGRI HDKMKRRLAQ
101: NREAARKSRL RKKAYVQQLE ESRLKLSQLE QELEKVKQQG HLGPSGSINT GIASFEMEYS HWLQEQSRRV SELRTALQSH ISDIELKMLV ESCLNHYANL
201: FQMKSDAAKA DVFYLISGMW RTSTERFFQW IGGFRPSELL NVVMPYLQPL TDQQILEVRN LQQSSQQAED ALSQGIDKLQ QSLAESIVID AVIESTHYPT
301: HMAAAIENLQ ALEGFVNQAD HLRQQTLQQM AKILTTRQSA RGLLALGEYL HRLRALSSLW AARPQEPT
101: NREAARKSRL RKKAYVQQLE ESRLKLSQLE QELEKVKQQG HLGPSGSINT GIASFEMEYS HWLQEQSRRV SELRTALQSH ISDIELKMLV ESCLNHYANL
201: FQMKSDAAKA DVFYLISGMW RTSTERFFQW IGGFRPSELL NVVMPYLQPL TDQQILEVRN LQQSSQQAED ALSQGIDKLQ QSLAESIVID AVIESTHYPT
301: HMAAAIENLQ ALEGFVNQAD HLRQQTLQQM AKILTTRQSA RGLLALGEYL HRLRALSSLW AARPQEPT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.