Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d026398_P006 | Maize | nucleus | 88.24 | 87.38 |
| Zm00001d016312_P001 | Maize | cytosol | 19.85 | 87.1 |
| Zm00001d002143_P002 | Maize | cytosol | 82.11 | 76.31 |
| Os04t0637000-01 | Rice | nucleus | 70.34 | 72.29 |
| TraesCS2D01G529000.1 | Wheat | nucleus | 68.63 | 65.88 |
| TraesCS2A01G526300.1 | Wheat | nucleus | 67.4 | 65.63 |
| TraesCS2B01G556600.1 | Wheat | nucleus | 68.63 | 64.37 |
| GSMUA_Achr5P16630_001 | Banana | nucleus | 55.15 | 61.64 |
| VIT_07s0031g01320.t01 | Wine grape | nucleus | 50.0 | 58.45 |
| KRG97639 | Soybean | nucleus | 49.26 | 55.52 |
| VIT_18s0001g04470.t01 | Wine grape | nucleus | 49.02 | 55.1 |
| AT5G10030.3 | Thale cress | nucleus | 49.02 | 54.95 |
| KRH31239 | Soybean | nucleus | 48.77 | 54.67 |
| Bra015646.1-P | Field mustard | nucleus | 45.34 | 54.57 |
| Solyc04g072460.2.1 | Tomato | nucleus | 47.79 | 54.02 |
| PGSC0003DMT400070884 | Potato | nucleus | 47.3 | 53.46 |
| Bra028604.1-P | Field mustard | nucleus | 47.06 | 53.04 |
| CDX85782 | Canola | nucleus | 47.06 | 53.04 |
| EES02530 | Sorghum | nucleus | 42.89 | 53.03 |
| Solyc12g056860.1.1 | Tomato | nucleus | 45.1 | 52.87 |
| CDY40074 | Canola | nucleus | 46.81 | 52.76 |
| CDX69866 | Canola | nucleus | 47.06 | 52.75 |
| Bra009063.1-P | Field mustard | nucleus | 47.06 | 52.75 |
| Bra024366.1-P | Field mustard | nucleus | 47.3 | 52.59 |
| CDY08810 | Canola | nucleus | 47.3 | 52.59 |
| AT5G65210.2 | Thale cress | nucleus | 47.06 | 52.17 |
| PGSC0003DMT400043651 | Potato | nucleus | 46.08 | 52.08 |
| KXG39494 | Sorghum | nucleus | 42.65 | 51.94 |
| CDY33975 | Canola | nucleus | 47.06 | 51.89 |
| CDY37811 | Canola | nucleus | 47.06 | 51.89 |
| Bra031871.1-P | Field mustard | nucleus | 46.81 | 51.62 |
| CDY14552 | Canola | nucleus | 46.32 | 51.5 |
| CDY21625 | Canola | nucleus | 45.83 | 51.37 |
| KXG36997 | Sorghum | nucleus | 41.91 | 51.35 |
| Solyc04g011670.2.1 | Tomato | nucleus | 47.06 | 51.34 |
| CDX68037 | Canola | nucleus | 46.57 | 51.21 |
| AT1G77920.1 | Thale cress | nucleus | 45.83 | 50.82 |
| Solyc04g054320.2.1 | Tomato | nucleus | 45.83 | 50.54 |
| PGSC0003DMT400033308 | Potato | nucleus | 43.63 | 50.0 |
| KRH59415 | Soybean | nucleus | 44.85 | 49.46 |
| KRH43266 | Soybean | nucleus | 45.34 | 48.81 |
| KRH53141 | Soybean | nucleus | 42.16 | 48.45 |
| Bra031364.1-P | Field mustard | nucleus | 44.85 | 48.41 |
| CDY18683 | Canola | cytosol | 44.12 | 48.39 |
| CDY38253 | Canola | nucleus | 45.59 | 48.31 |
| KRH64780 | Soybean | nucleus | 42.65 | 48.07 |
| KRH18838 | Soybean | nucleus | 43.38 | 47.84 |
| KRH16629 | Soybean | nucleus | 43.38 | 47.84 |
| CDX81273 | Canola | nucleus | 45.59 | 47.81 |
| AT1G22070.1 | Thale cress | nucleus | 44.85 | 47.66 |
| Bra016389.1-P | Field mustard | nucleus | 42.65 | 47.28 |
| CDY41495 | Canola | nucleus | 42.65 | 47.15 |
| CDY38843 | Canola | nucleus | 42.65 | 47.03 |
| KRH63045 | Soybean | cytosol | 10.78 | 46.81 |
| KXG22247 | Sorghum | nucleus | 37.99 | 46.69 |
| KXG38496 | Sorghum | nucleus | 35.54 | 46.62 |
| Zm00001d041428_P001 | Maize | cytosol | 17.65 | 46.15 |
| PGSC0003DMT400016235 | Potato | nucleus | 44.12 | 45.92 |
| Bra037809.1-P | Field mustard | nucleus | 43.14 | 44.9 |
| CDY21336 | Canola | nucleus | 45.59 | 44.5 |
| CDX88399 | Canola | nucleus | 46.32 | 43.95 |
| CDX87494 | Canola | nucleus | 47.06 | 43.24 |
| HORVU2Hr1G116090.2 | Barley | cytosol | 43.87 | 42.32 |
| OQU79985 | Sorghum | golgi, vacuole | 52.45 | 41.47 |
| EES03778 | Sorghum | nucleus | 44.12 | 38.46 |
| Bra037374.1-P | Field mustard | nucleus | 29.17 | 37.9 |
| KRG92164 | Soybean | nucleus | 21.81 | 37.87 |
| OQU76203 | Sorghum | nucleus | 39.71 | 35.06 |
| KRH34622 | Soybean | cytosol | 19.85 | 35.06 |
| OQU82891 | Sorghum | nucleus | 40.44 | 33.81 |
| KXG22976 | Sorghum | nucleus | 39.95 | 33.75 |
| OQU89155 | Sorghum | nucleus | 34.31 | 32.94 |
| KXG20382 | Sorghum | cytosol | 12.5 | 32.28 |
| KXG35912 | Sorghum | nucleus | 38.97 | 31.8 |
| KXG33735 | Sorghum | nucleus | 38.48 | 29.46 |
| OQU78097 | Sorghum | nucleus | 37.5 | 29.31 |
| OQU76708 | Sorghum | nucleus | 22.06 | 28.94 |
| CDX79240 | Canola | nucleus | 39.95 | 28.6 |
| KXG29702 | Sorghum | nucleus | 33.58 | 28.07 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | MapMan:15.5.4.7.1 | UniProt:A0A1B6PNH5 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| InterPro:IPR004827 | InterPro:IPR025422 | EnsemblPlants:KXG27222 | ProteinID:KXG27222 | ProteinID:KXG27222.1 | ProteinID:OQU82410.1 |
| ProteinID:OQU82411.1 | ProteinID:OQU82412.1 | ProteinID:OQU82413.1 | PFAM:PF00170 | PFAM:PF14144 | ScanProsite:PS00036 |
| PFscan:PS50217 | PFscan:PS51806 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF180 | SMART:SM00338 | EnsemblPlantsGene:SORBI_3006G233500 |
| SUPFAM:SSF57959 | InterPro:TGA_domain | UniParc:UPI0001C80621 | InterPro:bZIP | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr6:+:57541249..57549389
Molecular Weight (calculated)
45369.3 Da
IEP (calculated)
6.755
GRAVY (calculated)
-0.375
Length
408 amino acids
Sequence
(BLAST)
(BLAST)
001: MMELYSGYLE DHFNLHKLSI GSAASPPEYM TSASPAQFAA VPLRMGYGRP APSTAPPAPV MAGMWSSEAF KVVDSGHGTS ASTVMEADTK FETRLEDVQV
101: ALEPTRSTDQ ETSKPPERVM RRLAQNREAA RKSRLRKKAY IHQLETSRMK LAQLELELQR ARQQGAYANG NMGDSALGYA GSIDPGVSAF EIEYSHWVDE
201: QKRHTAELMS ALQGQQTSEL ELRLLVETGL SNYEHLFRIK AMAANADVFH VMSGMWKTPA ERFFLWIGGF RPSEVLKILS PQLEPLTEPQ RMLVGGLQHT
301: STQAEDALSQ GMEKLQQNLA ETLTAEADPF GPPDAYMLQM ATAVDRLKEL VGFVTQADHL RLTTLQQMHK ILTTRQAARG LLALGDYFQR LRTLSSLWAA
401: RPREAAIS
101: ALEPTRSTDQ ETSKPPERVM RRLAQNREAA RKSRLRKKAY IHQLETSRMK LAQLELELQR ARQQGAYANG NMGDSALGYA GSIDPGVSAF EIEYSHWVDE
201: QKRHTAELMS ALQGQQTSEL ELRLLVETGL SNYEHLFRIK AMAANADVFH VMSGMWKTPA ERFFLWIGGF RPSEVLKILS PQLEPLTEPQ RMLVGGLQHT
301: STQAEDALSQ GMEKLQQNLA ETLTAEADPF GPPDAYMLQM ATAVDRLKEL VGFVTQADHL RLTTLQQMHK ILTTRQAARG LLALGDYFQR LRTLSSLWAA
401: RPREAAIS
001: MNTTSTHFVP PRRFEVYEPL NQIGMWEESF KNNGDMYTPG SIIIPTNEKP DSLSEDTSHG TEGTPHKFDQ EASTSRHPDK IQRRLAQNRE AARKSRLRKK
101: AYVQQLETSR LKLIHLEQEL DRARQQGFYV GNGVDTNALS FSDNMSSGIV AFEMEYGHWV EEQNRQICEL RTVLHGQVSD IELRSLVENA MKHYFQLFRM
201: KSAAAKIDVF YVMSGMWKTS AERFFLWIGG FRPSELLKVL LPHFDPLTDQ QLLDVCNLRQ SCQQAEDALS QGMEKLQHTL AESVAAGKLG EGSYIPQMTC
301: AMERLEALVS FVNQADHLRH ETLQQMHRIL TTRQAARGLL ALGEYFQRLR ALSSSWAARQ REPT
101: AYVQQLETSR LKLIHLEQEL DRARQQGFYV GNGVDTNALS FSDNMSSGIV AFEMEYGHWV EEQNRQICEL RTVLHGQVSD IELRSLVENA MKHYFQLFRM
201: KSAAAKIDVF YVMSGMWKTS AERFFLWIGG FRPSELLKVL LPHFDPLTDQ QLLDVCNLRQ SCQQAEDALS QGMEKLQHTL AESVAAGKLG EGSYIPQMTC
301: AMERLEALVS FVNQADHLRH ETLQQMHRIL TTRQAARGLL ALGEYFQRLR ALSSSWAARQ REPT
Arabidopsis Description
TGA4At5g10030 [Source:UniProtKB/TrEMBL;Acc:Q24JJ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.