CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 1
nucleus 3
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74327
CDX91918
CDY25575
CDY34413

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22070.1	CDY25575	AT1G64280.1	10659709
AT1G22070.1	CDY34413	AT1G64280.1	10659709
AT1G22070.1	CDY25575	AT1G64280.1	10662863
AT1G22070.1	CDY34413	AT1G64280.1	10662863
AT1G22070.1	CDY25575	AT1G64280.1	15634206
AT1G22070.1	CDY34413	AT1G64280.1	15634206
AT1G22070.1	CDY25575	AT1G64280.1	21798944
AT1G22070.1	CDY34413	AT1G64280.1	21798944
AT1G22070.1	CDX74327	AT3G02000.1	19218396
AT1G22070.1	CDX91918	AT3G02000.1	19218396

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031364.1-P	Field mustard	nucleus	89.95	99.47
CDY38253	Canola	nucleus	89.71	97.4
CDY41495	Canola	nucleus	79.19	89.7
AT1G22070.1	Thale cress	nucleus	82.3	89.58
CDY38843	Canola	nucleus	77.99	88.11
CDX68037	Canola	nucleus	66.51	74.93
CDX88399	Canola	nucleus	69.62	67.67
VIT_18s0001g04470.t01	Wine grape	nucleus	57.42	66.12
CDX87494	Canola	nucleus	68.9	64.86
Solyc04g072460.2.1	Tomato	nucleus	52.39	60.66
PGSC0003DMT400070884	Potato	nucleus	52.15	60.39
Solyc12g056860.1.1	Tomato	nucleus	50.0	60.06
PGSC0003DMT400043651	Potato	nucleus	51.2	59.28
GSMUA_Achr5P16630_001	Banana	nucleus	51.67	59.18
CDY08810	Canola	nucleus	51.91	59.13
CDY33975	Canola	nucleus	51.44	58.11
CDY37811	Canola	nucleus	51.2	57.84
CDY14552	Canola	nucleus	50.48	57.49
CDX85782	Canola	nucleus	49.52	57.18
GSMUA_AchrUn_...	Banana	nucleus	48.33	57.06
CDY40074	Canola	nucleus	49.28	56.91
KRH63045	Soybean	cytosol	12.68	56.38
CDY18683	Canola	cytosol	49.76	55.91
GSMUA_Achr10P...	Banana	nucleus	46.65	55.56
KRH53141	Soybean	nucleus	47.13	55.49
CDX69866	Canola	nucleus	47.85	54.95
CDX81273	Canola	nucleus	50.96	54.76
KRH16629	Soybean	nucleus	48.09	54.32
KRH18838	Soybean	nucleus	47.85	54.05
KRH64780	Soybean	nucleus	46.65	53.87
CDY21625	Canola	nucleus	46.17	53.02
CDY14061	Canola	nucleus	40.67	52.15
CDY05010	Canola	nucleus	40.67	52.15
CDX70053	Canola	nucleus	40.19	51.38
CDY08443	Canola	nucleus	40.67	51.36
CDX98971	Canola	nucleus	40.19	51.22
CDY50562	Canola	nucleus	40.43	50.6
CDX73830	Canola	nucleus	39.95	50.45
CDY00762	Canola	nucleus	39.95	50.45
CDY52616	Canola	nucleus	40.19	50.45
Zm00001d016312_P001	Maize	cytosol	10.53	47.31
Os04t0637000-01	Rice	nucleus	44.74	47.1
CDY71150	Canola	nucleus, plastid	22.01	46.46
KXG27222	Sorghum	nucleus	44.5	45.59
CDY70396	Canola	mitochondrion	22.49	44.98
CDX79240	Canola	nucleus	60.05	44.04
CDY42138	Canola	nucleus	33.49	43.21
Zm00001d026398_P006	Maize	nucleus	42.34	42.96
TraesCS2D01G529000.1	Wheat	nucleus	43.3	42.59
TraesCS2A01G526300.1	Wheat	nucleus	42.58	42.48
TraesCS2B01G556600.1	Wheat	nucleus	44.02	42.3
KXG38496	Sorghum	nucleus	30.86	41.48
Zm00001d024160_P003	Maize	nucleus	41.87	41.27
CDY22689	Canola	nucleus	40.91	39.95
Zm00001d002143_P002	Maize	cytosol	40.91	38.95
CDY70714	Canola	nucleus	32.78	38.92
CDX70061	Canola	nucleus	40.91	37.92
CDY70235	Canola	nucleus	33.01	37.91
CDX98963	Canola	nucleus	40.67	37.69
CDY00417	Canola	mitochondrion	20.81	37.5
CDX95999	Canola	nucleus	39.23	37.1
CDX95068	Canola	nucleus	42.34	37.03
CDX93571	Canola	nucleus	42.11	36.82
CDY38608	Canola	nucleus	38.76	36.65
Zm00001d041428_P001	Maize	cytosol	13.64	36.54
CDY06309	Canola	nucleus	42.11	36.36
Os08t0176900-01	Rice	nucleus	32.3	34.7
OQU79985	Sorghum	golgi, vacuole	42.82	34.69
HORVU2Hr1G116090.2	Barley	cytosol	28.71	28.37

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	GO:A0A078G7F1	UniProt:A0A078G7F1	EnsemblPlants:CDY21336
ProteinID:CDY21336	ProteinID:CDY21336.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00015686001	InterPro:IPR004827
InterPro:IPR025422	PFAM:PF07716	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806
PANTHER:PTHR22952	PANTHER:PTHR22952:SF180	SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI0004EE756F
InterPro:bZIP	SEG:seg	:	:	:	:

Description

BnaA09g30910DBnaA09g30910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G7F1]

Coordinates

chrLK032120:+:940..4464

Molecular Weight (calculated)

47706.4 Da

IEP (calculated)

6.418

GRAVY (calculated)

-0.558

Length

418 amino acids

Sequence
(BLAST)

001: MKTRCRNFVI FFYWNILSSE CVSTRDSLFI SRLRDELSME MMSSSSSSTT QVVSLREMGM YEPFQQLSGW ENAFNTIGTS NQNNNNNPSS STVPEVEADD
101: NNKANYTSMY NNSVEAEPSS NNDQDDDQIN DKMKRRLAQN REAARKSRLR KKAHVQQLEE SRLKLSQLEQ ELARARQQGL CVRNSSDSSY LGPAGTMNTG
201: IAAFEMEYTH WLEEQNKRVS EIRTALQAHI SDIELKMLVD ICLNHYANLF RMKADAAKAD VFFLISGMWR TSTERFFQWI GGFRPSELLN VVMPYIEPLT
301: DQQLLEVRNL QQSSQQAEEA LSQGLDKLQQ GLVENIAVDI RVVESVSHGA QMASAMENLQ ALEGFVNQAD HLRKQTLQQM SKILTTRQAA RGLLALGEYF
401: HRLRALSSLW AARPRERT

Best Arabidopsis Sequence Match ( AT1G22070.1 )
(BLAST)

001: MEMMSSSSST TQVVSFRDMG MYEPFQQLSG WESPFKSDIN NITSNQNNNQ SSSTTLEVDA RPEADDNNRV NYTSVYNNSL EAEPSSNNDQ DEDRINDKMK
101: RRLAQNREAA RKSRLRKKAH VQQLEESRLK LSQLEQELVR ARQQGLCVRN SSDTSYLGPA GNMNSGIAAF EMEYTHWLEE QNRRVSEIRT ALQAHIGDIE
201: LKMLVDSCLN HYANLFRMKA DAAKADVFFL MSGMWRTSTE RFFQWIGGFR PSELLNVVMP YVEPLTDQQL LEVRNLQQSS QQAEEALSQG LDKLQQGLVE
301: SIAIQIKVVE SVNHGAPMAS AMENLQALES FVNQADHLRQ QTLQQMSKIL TTRQAARGLL ALGEYFHRLR ALSSLWAARP REHT

Arabidopsis Description

TGA3At1g22070 [Source:UniProtKB/TrEMBL;Acc:Q147Q9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.