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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • vacuole 2
  • cytosol 2
  • plastid 2
  • extracellular 1
  • endoplasmic reticulum 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plastid, secretory
BaCelLo:nucleus
EpiLoc:vacuole
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:secretory
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX87494
CDX88399
CDX95999
CDY05010
CDY14061
CDY21336
CDY38253
CDY38608
CDY38843
CDY41495

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G02000.1 CDY21336 AT1G22070.1 19218396
AT3G02000.1 CDY38253 AT1G22070.1 19218396
AT3G02000.1 CDY38843 AT1G22070.1 19218396
AT3G02000.1 CDY41495 AT1G22070.1 19218396
AT3G02000.1 CDX95999 AT1G68640.1 19218396
AT3G02000.1 CDY38608 AT1G68640.1 19218396
AT3G02000.1 CDX87494 AT1G77920.1 19218396
AT3G02000.1 CDX88399 AT1G77920.1 19218396
AT3G02000.1 CDY05010 AT5G06960.1 19218396
AT3G02000.1 CDY14061 AT5G06960.1 19218396
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra000980.1-P Field mustard cytosol 100.0 100.0
CDX91918 Canola cytosol 96.35 98.51
AT3G02000.1 Thale cress cytosol 91.24 91.91
CDX78558 Canola cytosol 76.64 76.64
CDX70540 Canola cytosol 73.72 73.72
CDX85614 Canola cytosol 73.72 73.72
CDX91084 Canola cytosol 72.26 72.26
EES05136 Sorghum cytosol 61.31 65.12
Os04t0393500-01 Rice cytosol 62.77 63.7
CDX69609 Canola cytosol 46.72 63.37
Zm00001d016593_P001 Maize cytosol 59.85 63.08
HORVU0Hr1G003840.1 Barley extracellular 61.31 62.69
TraesCS2A01G285600.1 Wheat cytosol, extracellular 61.31 62.69
GSMUA_AchrUn_... Banana cytosol 59.12 62.31
TraesCS2D01G284300.1 Wheat cytosol, extracellular 60.58 61.94
TraesCS2B01G302700.1 Wheat cytosol, extracellular 60.58 61.94
GSMUA_Achr10P... Banana cytosol 60.58 61.48
GSMUA_Achr6P23860_001 Banana plastid 60.58 61.03
GSMUA_Achr3P18710_001 Banana cytosol 59.12 60.9
CDY32430 Canola cytosol, plastid 45.26 60.78
Os02t0512400-01 Rice cytosol 59.85 60.74
PGSC0003DMT400013427 Potato mitochondrion, plastid 52.55 60.0
EES10652 Sorghum cytosol 59.85 59.85
KRG94592 Soybean plastid 57.66 59.85
Solyc05g015910.1.1 Tomato cytosol 56.93 59.54
PGSC0003DMT400013435 Potato cytosol, plastid 51.82 59.17
Zm00001d003927_P001 Maize cytosol 59.12 59.12
KRH06898 Soybean plastid 57.66 58.96
CDY48890 Canola cytosol, plastid 43.8 58.82
Solyc01g009910.1.1 Tomato mitochondrion, plastid 51.09 58.33
Solyc01g009900.2.1 Tomato cytosol, plastid 51.09 58.33
CDY48891 Canola cytosol 42.34 56.86
CDY32431 Canola cytosol 42.34 56.86
PGSC0003DMT400006076 Potato plastid 55.47 56.72
KRH70543 Soybean cytosol 54.74 56.39
CDY37292 Canola cytosol, plastid 41.61 55.88
CDY19270 Canola cytosol, plastid 41.61 55.88
CDY68328 Canola cytosol 40.88 54.9
Solyc01g009890.1.1 Tomato cytosol, plastid 51.82 54.62
PGSC0003DMT400013430 Potato cytosol 51.82 54.62
CDY02610 Canola cytosol 40.15 53.92
CDX92597 Canola cytosol 40.15 53.92
CDX70828 Canola cytosol 40.15 53.92
CDY13904 Canola cytosol 40.15 53.92
CDY66333 Canola cytosol 39.42 52.94
CDX88929 Canola cytosol 39.42 52.94
KRH01571 Soybean cytosol 54.01 52.11
CDY66332 Canola cytosol 38.69 51.96
CDX90576 Canola cytosol 37.96 50.98
CDY54296 Canola cytosol 37.96 50.98
CDY09747 Canola cytosol 37.96 50.98
CDY09079 Canola cytosol 37.23 50.0
CDY22746 Canola cytosol 37.23 50.0
VIT_01s0146g00220.t01 Wine grape cytosol 56.93 50.0
CDY53023 Canola cytosol 37.23 49.51
CDY58422 Canola cytosol 60.58 49.4
CDY54294 Canola cytosol 36.5 49.02
CDX80138 Canola cytosol 36.5 48.54
CDY09078 Canola cytosol, extracellular 35.77 48.51
CDY22745 Canola cytosol, extracellular 35.77 48.51
CDY06230 Canola cytosol 35.04 48.48
CDY54881 Canola cytosol 35.04 48.48
CDY09953 Canola cytosol 35.04 48.48
CDX89161 Canola cytosol 35.77 47.57
CDY52638 Canola cytosol 35.04 47.06
CDY29666 Canola cytosol 35.04 47.06
CDY23990 Canola cytosol 35.04 47.06
CDX76677 Canola cytosol 35.04 46.6
CDY11465 Canola cytosol 35.04 46.6
CDY11464 Canola cytosol 35.04 46.6
CDY10229 Canola cytosol 33.58 46.46
CDY69190 Canola cytosol 35.04 46.15
CDX84825 Canola cytosol 34.31 46.08
CDY10745 Canola cytosol 34.31 46.08
CDX97824 Canola cytosol 34.31 46.08
CDX95739 Canola cytosol 34.31 46.08
CDX80139 Canola cytosol 33.58 45.1
CDY53024 Canola cytosol 33.58 45.1
CDY55528 Canola cytosol 33.58 43.81
CDX89159 Canola cytosol 32.12 43.14
CDY25124 Canola cytosol 32.12 43.14
CDX76678 Canola cytosol 32.12 43.14
CDY11466 Canola cytosol 32.12 43.14
CDX93949 Canola cytosol 32.12 43.14
CDY27469 Canola cytosol 32.85 42.86
CDX67910 Canola cytosol 31.39 42.16
CDX89162 Canola cytosol 31.39 42.16
CDY68061 Canola cytosol 31.39 42.16
CDY11462 Canola cytosol 30.66 41.18
CDY18141 Canola cytosol 30.66 41.18
CDX76675 Canola cytosol 30.66 41.18
CDX89921 Canola cytosol 29.93 40.2
CDY32493 Canola cytosol 29.93 40.2
CDX97821 Canola mitochondrion 28.47 29.32
CDY71728 Canola cytosol 27.74 26.76
Protein Annotations
MapMan:18.8.2Gene3D:3.40.30.10GO:A0A078CBT3EnsemblPlants:CDX74327ProteinID:CDX74327ProteinID:CDX74327.1
GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0005623GO:GO:0008150GO:GO:0009055
GO:GO:0009987GO:GO:0015035GO:GO:0019725GO:GO:0045454EnsemblPlantsGene:GSBRNA2T00112122001InterPro:GlrX-like_pln_2
InterPro:GlutaredoxinInterPro:IPR002109PFAM:PF00462PFscan:PS51354PANTHER:PTHR10168PANTHER:PTHR10168:SF128
SUPFAM:SSF52833TIGRFAMs:TIGR02189InterPro:Thioredoxin-like_sfUniParc:UPI000254077E::
Description
BnaA03g27200D
Coordinates
chrLK031800:-:2198612..2199025
Molecular Weight (calculated)
14294.6 Da
IEP (calculated)
6.915
GRAVY (calculated)
0.499
Length
137 amino acids
Sequence
(BLAST)
001: MQYQTESWGS YKMSNIGFGG DVGLAADTSL LRLESLVAES AVVIFSVSTC CMCHAVKGLF RGMGVSPAVH ELDLHPYGGD IQRALIRLLG CSGASSPGAL
101: PVVFIGGKLV GAMDRVMASH INGSLVPLLK DAGALWL
Best Arabidopsis Sequence Match ( AT3G02000.1 )
(BLAST)
001: MQYQTESWGS YKMSSLGFGG LGMVADTGLL RIESLASESA VVIFSVSTCC MCHAVKGLFR GMGVSPAVHE LDLHPYGGDI QRALIRLLGC SGSSSPGSLP
101: VVFIGGKLVG AMDRVMASHI NGSLVPLLKD AGALWL
Arabidopsis Description
GRXC7ROXY1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBU2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.