Factsheet for Solyc01g009910.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, mitochondrion

Predictor Summary:

plastid 4
vacuole 1
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008730.2.1
Solyc03g118540.2.1
Solyc04g072460.2.1
Solyc05g009660.2.1
Solyc05g040050.1.1
Solyc06g065650.2.1
Solyc06g068930.1.1
Solyc07g047690.1.1
Solyc11g064950.1.1
Solyc12g056860.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02000.1	Solyc04g072460.2.1	AT1G22070.1	19218396
AT3G02000.1	Solyc12g056860.1.1	AT1G22070.1	19218396
AT3G02000.1	Solyc05g009660.2.1	AT1G68640.1	19218396
AT3G02000.1	Solyc04g072460.2.1	AT1G77920.1	19218396
AT3G02000.1	Solyc12g056860.1.1	AT1G77920.1	19218396
AT3G02000.1	Solyc01g008730.2.1	AT5G06960.1	19218396
AT3G02000.1	Solyc11g064950.1.1	AT5G06960.1	19218396
AT5G14070.1	Solyc05g040050.1.1	AT2G05230.1	21798944
AT5G14070.1	Solyc07g047690.1.1	AT2G05230.1	21798944
AT5G14070.1	Solyc05g040050.1.1	AT2G05250.1	21798944
AT5G14070.1	Solyc07g047690.1.1	AT2G05250.1	21798944
AT5G14070.1	Solyc03g118540.2.1	AT3G17860.1	21798944
AT5G14070.1	Solyc06g068930.1.1	AT3G17860.1	21798944
AT5G14070.1	Solyc06g065650.2.1	AT4G32570.1	21798944
AT5G14070.1	Solyc01g008730.2.1	AT5G06960.1	21798944
AT5G14070.1	Solyc11g064950.1.1	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013427	Potato	mitochondrion, plastid	91.67	91.67
Solyc01g009900.2.1	Tomato	cytosol, plastid	90.0	90.0
Solyc01g009890.1.1	Tomato	cytosol, plastid	82.5	76.15
Solyc05g015910.1.1	Tomato	cytosol	78.33	71.76
Solyc01g067440.2.1	Tomato	cytosol	55.83	65.69
KRH70543	Soybean	cytosol	70.0	63.16
KRG94592	Soybean	plastid	69.17	62.88
KRH06898	Soybean	plastid	70.0	62.69
GSMUA_Achr10P...	Banana	cytosol	70.0	62.22
EES05136	Sorghum	cytosol	65.83	61.24
GSMUA_Achr6P23860_001	Banana	plastid	69.17	61.03
GSMUA_Achr3P18710_001	Banana	cytosol	65.83	59.4
Zm00001d016593_P001	Maize	cytosol	64.17	59.23
KRH01571	Soybean	cytosol	70.0	59.15
HORVU0Hr1G003840.1	Barley	extracellular	65.83	58.96
TraesCS2D01G284300.1	Wheat	cytosol, extracellular	65.0	58.21
TraesCS2B01G302700.1	Wheat	cytosol, extracellular	65.0	58.21
TraesCS2A01G285600.1	Wheat	cytosol, extracellular	65.0	58.21
Os02t0512400-01	Rice	cytosol	65.0	57.78
GSMUA_AchrUn_...	Banana	cytosol	62.5	57.69
VIT_01s0146g00220.t01	Wine grape	cytosol	74.17	57.05
Os04t0393500-01	Rice	cytosol	64.17	57.04
EES10652	Sorghum	cytosol	65.0	56.93
Zm00001d003927_P001	Maize	cytosol	65.0	56.93
Solyc01g067460.1.1	Tomato	cytosol	48.33	56.86
AT3G02000.1	Thale cress	cytosol	60.83	53.68
CDX91918	Canola	cytosol	58.33	52.24
Bra006236.1-P	Field mustard	cytosol	59.17	52.21
Solyc09g074590.1.1	Tomato	cytosol	44.17	51.96
Solyc09g074580.1.1	Tomato	cytosol	44.17	51.96
CDX78558	Canola	cytosol	59.17	51.82
CDX70540	Canola	cytosol	59.17	51.82
Bra000980.1-P	Field mustard	cytosol	58.33	51.09
CDX85614	Canola	cytosol	58.33	51.09
CDX74327	Canola	cytosol	58.33	51.09
Bra023448.1-P	Field mustard	cytosol	58.33	51.09
Solyc09g074600.1.1	Tomato	cytosol	43.33	50.98
Solyc06g008750.1.1	Tomato	cytosol	43.33	50.98
Bra008782.1-P	Field mustard	cytosol	56.67	50.75
CDX91084	Canola	cytosol	56.67	49.63
AT5G14070.1	Thale cress	cytosol	57.5	49.29
Solyc08g036570.1.1	Tomato	cytosol	51.67	49.21
Solyc04g011790.1.1	Tomato	cytosol, plastid	40.83	48.04
Solyc04g011830.1.1	Tomato	cytosol, plastid	40.0	47.06
Solyc04g011870.1.1	Tomato	cytosol, plastid	40.0	47.06
Solyc06g054570.1.1	Tomato	cytosol	40.0	46.6
Solyc06g008760.1.1	Tomato	cytosol	39.17	46.53
Solyc04g011880.1.1	Tomato	cytosol, plastid	39.17	46.08
Solyc04g011850.1.1	Tomato	cytosol	39.17	46.08
CDX69609	Canola	cytosol	38.33	45.54
Solyc04g011820.1.1	Tomato	cytosol	35.83	45.26
Solyc04g011860.1.1	Tomato	cytosol, plastid	38.33	45.1
Solyc04g011840.1.1	Tomato	cytosol	38.33	45.1
Solyc04g053110.1.1	Tomato	cytosol	38.33	45.1
Solyc04g011810.1.1	Tomato	cytosol, plastid	38.33	45.1
Solyc04g011780.1.1	Tomato	extracellular	38.33	45.1
Solyc05g051730.1.1	Tomato	cytosol	38.33	44.66
Solyc04g011800.1.1	Tomato	cytosol, plastid	37.5	44.12
Solyc09g074570.1.1	Tomato	cytosol	35.83	40.57
Solyc05g051720.1.1	Tomato	cytosol	35.0	40.38
CDY58422	Canola	cytosol	48.33	34.52

Protein Annotations

MapMan:18.8.2	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035
GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:GlrX-like_pln_2	InterPro:Glutaredoxin
InterPro:IPR002109	UniProt:K4ATI6	PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF62
SUPFAM:SSF52833	EnsemblPlantsGene:Solyc01g009910.1	EnsemblPlants:Solyc01g009910.1.1	TIGRFAMs:TIGR02189	InterPro:Thioredoxin-like_sf	UniParc:UPI00027618F1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:4479946..4480308

Molecular Weight (calculated)

13092.0 Da

IEP (calculated)

8.654

GRAVY (calculated)

0.068

Length

120 amino acids

Sequence
(BLAST)

001: MQYQNTRARQ RSSSSDLLER VARLASGSAV VIFSSSSCCM CHAIKRLFCE LGVSPMVYEL DQDPNGKGME RALYKLLGNS PTVPVVFIGG ELIGSMDRVM
101: ASHINGTLVP RLKEAGALWL

Best Arabidopsis Sequence Match ( AT5G14070.1 )
(BLAST)

001: MQYKTETRGS LSYNNNSKVM NNMNVFPSET LAKIESMAAE NAVVIFSVST CCMCHAIKRL FRGMGVSPAV HELDLLPYGV EIHRALLRLL GCSSGGATSP
101: GALPVVFIGG KMVGAMERVM ASHINGSLVP LLKDAGALWL

Arabidopsis Description

GRXC8Glutaredoxin-C8 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF89]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.