Factsheet for Solyc07g047690.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
golgi 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g062920.2.1
Solyc02g085570.2.1
Solyc06g075310.2.1
Solyc11g072410.1.1
Solyc12g008750.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G05230.1	Solyc02g062920.2.1	AT4G36690.1	21798944
AT2G05230.1	Solyc02g085570.2.1	AT4G36690.1	21798944
AT2G05230.1	Solyc12g008750.1.1	AT4G36690.1	21798944
AT2G05230.1	Solyc06g075310.2.1	AT5G60340.1	21798944
AT2G05230.1	Solyc11g072410.1.1	AT5G60340.1	21798944
AT2G05250.1	Solyc02g062920.2.1	AT4G36690.1	21798944
AT2G05250.1	Solyc02g085570.2.1	AT4G36690.1	21798944
AT2G05250.1	Solyc12g008750.1.1	AT4G36690.1	21798944
AT2G05250.1	Solyc06g075310.2.1	AT5G60340.1	21798944
AT2G05250.1	Solyc11g072410.1.1	AT5G60340.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015678	Potato	nucleus	96.7	96.7
Solyc05g040050.1.1	Tomato	nucleus	68.91	69.35
VIT_12s0057g00710.t01	Wine grape	cytosol	55.71	63.26
KRH73997	Soybean	nucleus	53.3	59.57
KRH14137	Soybean	nucleus	53.17	59.26
AT2G05250.1	Thale cress	cytosol	43.65	48.73
AT2G05230.1	Thale cress	cytosol	43.65	48.73
Bra013179.1-P	Field mustard	nucleus	42.64	48.48
CDX93081	Canola	nucleus	42.64	48.48
CDY15046	Canola	nucleus	42.39	48.41
CDX74632	Canola	cytosol	36.04	48.38
CDY47298	Canola	cytosol	35.53	47.95
Bra035378.1-P	Field mustard	cytosol	41.5	47.53
Solyc03g019630.1.1	Tomato	nucleus	8.88	44.87
GSMUA_Achr8P00660_001	Banana	cytosol	31.85	41.69
Solyc03g007280.2.1	Tomato	cytosol	9.64	38.97
GSMUA_Achr3P02570_001	Banana	nucleus	25.76	38.81
GSMUA_Achr2P21160_001	Banana	cytosol	26.02	38.1
GSMUA_Achr11P...	Banana	cytosol	24.24	38.05
Os02t0510000-01	Rice	cytosol	35.28	37.87
OQU85000	Sorghum	cytosol	34.39	37.23
GSMUA_Achr10P...	Banana	cytosol	28.68	36.87
EES10633	Sorghum	cytosol	34.01	36.46
TraesCS2D01G283100.2	Wheat	cytosol	33.88	36.43
TraesCS2A01G284200.2	Wheat	cytosol	33.88	36.43
GSMUA_Achr6P12230_001	Banana	nucleus	26.65	36.21
Zm00001d050565_P001	Maize	cytosol	29.44	36.02
Zm00001d003948_P001	Maize	cytosol	33.38	35.73
TraesCS3A01G536400.1	Wheat	cytosol	33.63	35.71
TraesCS3B01G607500.1	Wheat	cytosol	33.63	35.71
Zm00001d025238_P001	Maize	cytosol	33.25	35.69
TraesCS2B01G301100.1	Wheat	cytosol	31.98	35.69
TraesCS3D01G541800.1	Wheat	cytosol	33.25	35.12
HORVU1Hr1G001860.1	Barley	nucleus	19.54	35.0
Zm00001d025585_P001	Maize	cytosol	32.11	34.52
Zm00001d025584_P001	Maize	cytosol	31.98	34.38
Os03t0401200-01	Rice	cytosol	32.49	34.22
EES07899	Sorghum	cytosol	31.35	33.61
EES10933	Sorghum	cytosol	30.71	33.43
TraesCS5A01G493100.1	Wheat	cytosol	32.23	33.38
TraesCS4D01G315600.1	Wheat	cytosol	31.6	32.72
Solyc01g044270.2.1	Tomato	cytosol	31.85	32.26
Os04t0388800-01	Rice	nucleus	24.37	32.11
Solyc01g057670.1.1	Tomato	mitochondrion	5.46	30.71
TraesCS3B01G470100.1	Wheat	nucleus	28.05	30.44
TraesCS4B01G319100.1	Wheat	cytosol	27.28	30.2
Os01t0923800-01	Rice	nucleus	28.43	30.11
TraesCS3A01G435100.1	Wheat	nucleus	29.06	28.95
Zm00001d011997_P001	Maize	nucleus	27.92	26.76
KXG34016	Sorghum	nucleus	27.92	26.54
Solyc03g019640.1.1	Tomato	nucleus	30.46	25.83
Solyc10g007630.1.1	Tomato	cytosol	15.61	25.31
Solyc08g029220.1.1	Tomato	nucleus	22.08	22.05
Solyc01g057650.1.1	Tomato	cytosol	4.7	21.64
Solyc01g065570.2.1	Tomato	cytosol	6.35	21.01
Solyc01g067780.1.1	Tomato	cytosol	22.59	19.71
Solyc01g098310.1.1	Tomato	cytosol	11.17	19.3
Solyc07g039220.1.1	Tomato	cytosol	7.99	17.85
Solyc01g057750.1.1	Tomato	cytosol	13.83	17.58
Solyc08g005300.1.1	Tomato	nucleus	19.8	17.11
Solyc01g098250.2.1	Tomato	nucleus	21.32	16.92
Solyc01g098330.1.1	Tomato	nucleus	8.12	15.61
Solyc01g098340.2.1	Tomato	cytosol	11.42	11.25
Solyc01g067770.1.1	Tomato	extracellular, vacuole	1.9	5.49

Protein Annotations

EnsemblPlants:Solyc07g047690.1.1	EnsemblPlantsGene:Solyc07g047690.1	Gene3D:1.10.287.110	InterPro:DUF3444	InterPro:DnaJ_domain	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	ncoils:Coil	PANTHER:PTHR44137	PANTHER:PTHR44137:SF2	PFAM:PF00226
PFAM:PF11926	PFscan:PS50076	PRINTS:PR00625	SEG:seg	SMART:SM00271	SUPFAM:SSF46565
UniParc:UPI000276AC24	UniProt:K4CEX5	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr7:+:58923677..58926043

Molecular Weight (calculated)

87829.5 Da

IEP (calculated)

7.324

GRAVY (calculated)

-0.550

Length

788 amino acids

Sequence
(BLAST)

001: MGTNMEEALK AKTNAERRFV EKDILSAKNY ALKAQMLYPH LEGISQMVAT FGVLSAAETK VNGEYDFYAI LGLDSSVDKA KLKKQYKKMA VLLHPDKNKS
101: VGADGAFRLV SEAWTVLSDV SKRSSYDHRR SLFTLHGSGV GSYDSYSNSS VSHNRLDTFW TVCTSCHVQY EYLRKYLNKR LSCKNCRGVF IAAETGLAPV
201: NGSYSYSSWS NGYGSHGCGA TYVPTTSVYA ANNGVSGHHS GPCSEHVSNL SFQWSSSGNS APVLDSNGSS TAVSFANQAS RKITRRRGRG KHEVKKMVSN
301: GVLNGHTVCN EQIPRRPGRP PKKIKIGVEG TYSYSNGEMA LKTAGEVKMT DGNGDGNLKQ NIKLLNPAEA SIKRHSAAPA FDARRLLIDK ARAEIRKKLE
401: EIKLAYEAAA AETEKKRKVD AEFGESGERP KGAVQEVVVH QSELGKTGSM TIVVPDSDFH DFDKDRSEDC FRPKQIWAVY DEEDGMPRLY CLIREIISVK
501: PFKVHISYIS SKTDSEFGLV NWLDSGFTKS CGNFRAFNSE IVEHVNIFSH LLSKEKVGRG GSIRIYPKSG DIWAVYRNWS PDWDETTPAE VRHQYEMVEV
601: LDDYSEELGV CVTPLVKLDG FKTVYSRNTN KDAIRLIPRR EMLRFSHQVP SCLLKGERMN LPEGCWDLDP AAIPEDLLQR VNDAKEERTT EAESPVGFDL
701: NVTSQAETKM LMEEELGQTE YPGVPDELHG SRCGLQIQDI SNDPQNLFRI STELPQSVKE VHSCEEPSRM EKNFSATPGE HFRAVTEV

Best Arabidopsis Sequence Match ( AT2G05250.1 )
(BLAST)

001: MEAYREEALR VKQIAERRFA EKDFTSARSY ALKAKSLFPD LEGLSQMVAT FEVYLASQTR SGGQIDYYAV LGLKPSAGKR EVKKQYKKMA VLLHPDKNKC
101: IGADGAFHLI SEAWSFLSNE FNKSTFYYKR KKHIDSTEVQ KHSTEYMPGT GTGTGTAVFD RFPPSSERLD TFWTVCTSCK VQYEYLRKYV NKRLSCKNCR
201: GAFIAVETGP APVSAPFHYT PPSHAPPSHA PPSHAPPSNG YGAHGYDAMS RMPTNSTYFL GHYPGQGHGY DYSTNGSYEW SSYSGTTTSP GNLDLKRVSS
301: VSNGYPYKHS NSVVSGGINK VKDGSNGTCS KKSTPGGLIY PNQISMSAHA SANKVGRPGK KSKVFMEAAA NGFVENPLRS VSVSKTANTD AKMDQDYKLH
401: IQSSTRRWSA ASVLDTRKPL IQKARTDIKQ RLEMMRLALE AAAAAEDATP LDEKTVLSCK LGDVTGRKTN GPITVPDSDF HDFDKNRSEE SFEPRQIWAI
501: YDEDDGMPRL YCVVREVLSV QPFKIDIAYL SSKTDIEFGS MKWVQYGFTK SCGHFRIRNS DIVDHVNIFS HLLKGKKTGR GGCVRIFPTA GEIWAVYKNW
601: SLNWDGSTPD EVRHQYEMVE ILDEYTEQYG VCVTPLVKLE GYKTVYHRST REDSKKWIPR CEMLRFSHQV PSWFLKDATS GFPENCWDLD PAAIPEELLH
701: IGAGTN

Arabidopsis Description

At2g05250/F5G3.15 [Source:UniProtKB/TrEMBL;Acc:Q9S7L6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.