Factsheet for Solyc01g098250.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057904	Potato	nucleus	94.86	87.14
Solyc08g029220.1.1	Tomato	nucleus	49.14	61.85
Solyc01g098340.2.1	Tomato	cytosol	44.41	55.12
Solyc01g098330.1.1	Tomato	nucleus	19.64	47.56
Solyc03g019630.1.1	Tomato	nucleus	6.85	43.59
GSMUA_Achr11P...	Banana	nucleus	28.3	42.97
Bra039476.1-P	Field mustard	cytosol	8.56	41.26
KRG92798	Soybean	cytosol	26.89	37.66
GSMUA_Achr2P02410_001	Banana	cytosol	29.31	37.6
KRH34004	Soybean	cytosol	11.88	37.11
Solyc03g007280.2.1	Tomato	cytosol	7.25	36.92
CDX88917	Canola	nucleus	12.29	36.75
Solyc01g057750.1.1	Tomato	cytosol	22.76	36.45
Solyc01g067780.1.1	Tomato	cytosol	32.93	36.21
KRH34003	Soybean	cytosol	10.57	36.08
Solyc07g039220.1.1	Tomato	cytosol	12.79	35.98
VIT_14s0030g00640.t01	Wine grape	nucleus	41.99	35.67
Solyc01g067770.1.1	Tomato	extracellular, vacuole	9.67	35.16
KRG96896	Soybean	cytosol	37.16	34.88
KRH68628	Soybean	cytosol	37.46	34.86
Solyc01g057650.1.1	Tomato	cytosol	5.94	34.5
GSMUA_Achr5P00460_001	Banana	cytosol	25.18	34.39
CDX70837	Canola	mitochondrion	17.32	34.13
Zm00001d040846_P001	Maize	cytosol	31.32	33.23
Solyc01g098310.1.1	Tomato	cytosol	15.01	32.68
CDY13918	Canola	nucleus	18.53	32.11
EES00793	Sorghum	cytosol	31.42	31.93
AT5G18730.1	Thale cress	cytosol	16.92	31.82
Bra002183.1-P	Field mustard	nucleus	18.03	31.51
Bra006478.1-P	Field mustard	nucleus	16.82	31.39
Os01t0375100-01	Rice	nucleus	31.82	31.35
Bra006479.1-P	Field mustard	cytosol	17.42	31.34
HORVU6Hr1G033850.1	Barley	cytosol	30.61	31.18
TraesCS6A01G167100.1	Wheat	cytosol	30.51	31.05
CDX88918	Canola	cytosol	16.62	31.02
TraesCS3A01G213800.3	Wheat	nucleus	31.92	30.99
TraesCS6B01G194500.1	Wheat	cytosol	30.41	30.94
TraesCS6D01G155600.1	Wheat	cytosol	30.41	30.94
CDX70843	Canola	extracellular, golgi	16.82	30.87
TraesCS3D01G215900.1	Wheat	nucleus	31.82	30.86
TraesCS3B01G244000.4	Wheat	nucleus	32.02	30.75
Solyc01g057670.1.1	Tomato	mitochondrion	4.33	30.71
Solyc10g007630.1.1	Tomato	cytosol	15.01	30.66
AT5G18740.1	Thale cress	nucleus	13.19	30.47
Os06t0535300-01	Rice	nucleus	31.02	30.26
KXG32106	Sorghum	cytosol	30.61	30.07
TraesCS4B01G101500.1	Wheat	cytosol	26.99	29.91
CDX99992	Canola	cytosol	28.3	29.86
Zm00001d008412_P001	Maize	cytosol	30.61	29.83
Zm00001d008413_P001	Maize	cytosol	30.51	29.76
CDX70840	Canola	nucleus	17.32	29.45
CDX92586	Canola	nucleus	10.37	29.43
Os11t0578100-00	Rice	cytosol	31.12	29.34
EER88793	Sorghum	cytosol	28.0	29.32
Bra006476.1-P	Field mustard	nucleus	17.32	29.25
CDX88920	Canola	nucleus	17.32	29.25
TraesCS2A01G084900.1	Wheat	nucleus	30.31	29.11
CDY19714	Canola	nucleus	28.2	29.11
Bra009972.1-P	Field mustard	nucleus	18.33	28.93
CDX86172	Canola	nucleus	18.33	28.93
HORVU3Hr1G051850.2	Barley	nucleus	32.43	28.47
HORVU4Hr1G043860.4	Barley	cytosol	27.19	28.45
HORVU7Hr1G050080.1	Barley	nucleus	29.61	28.43
KXG28768	Sorghum	nucleus	27.79	28.31
CDY27809	Canola	nucleus	28.1	28.12
CDX88924	Canola	plastid	19.94	28.01
Bra024236.1-P	Field mustard	nucleus	10.37	27.99
Bra006473.1-P	Field mustard	plastid	19.64	27.74
CDX80667	Canola	nucleus	18.53	27.67
Zm00001d019461_P002	Maize	cytosol	31.02	27.6
OQU83710	Sorghum	cytosol	26.99	27.52
EER98396	Sorghum	nucleus	31.52	27.43
TraesCS2D01G082800.1	Wheat	nucleus	30.11	27.21
AT3G05110.1	Thale cress	nucleus	10.17	27.15
TraesCS4A01G214500.1	Wheat	nucleus	18.23	27.01
AT5G27240.1	Thale cress	nucleus	30.01	26.99
TraesCS2B01G099600.2	Wheat	nucleus	29.81	26.98
EES09993	Sorghum	nucleus	29.81	26.84
EES08665	Sorghum	nucleus	18.13	26.51
TraesCS1B01G054900.1	Wheat	nucleus	31.72	26.43
TraesCS1A01G042500.1	Wheat	nucleus	31.62	26.39
HORVU1Hr1G008940.2	Barley	nucleus	31.82	26.38
TraesCS1D01G042900.1	Wheat	nucleus	31.62	26.34
Solyc01g044270.2.1	Tomato	cytosol	19.54	24.94
OQU83709	Sorghum	cytosol	28.8	24.61
HORVU2Hr1G084660.1	Barley	cytosol	21.55	24.6
TraesCS2D01G077700.1	Wheat	cytosol	21.35	24.57
TraesCS2B01G095100.1	Wheat	cytosol	21.15	24.31
HORVU2Hr1G013270.2	Barley	cytosol	21.15	24.17
Os11t0574200-00	Rice	cytosol	7.96	24.16
CDX92856	Canola	nucleus	11.38	24.04
CDY29872	Canola	cytosol	10.78	23.99
Bra039477.1-P	Field mustard	plastid	12.99	23.98
Zm00001d052947_P001	Maize	plastid	20.85	23.93
CDY41919	Canola	nucleus, plastid	28.4	23.68
TraesCS2A01G347700.1	Wheat	mitochondrion	21.45	23.18
Os11t0573800-00	Rice	nucleus	21.35	23.09
TraesCS2B01G366100.1	Wheat	cytosol	21.35	23.07
CDY27796	Canola	cytosol	12.19	22.87
AT3G04960.3	Thale cress	cytosol	13.9	22.81
AT3G04980.2	Thale cress	nucleus	26.89	22.57
CDY41935	Canola	cytosol	12.08	22.56
Bra039461.1-P	Field mustard	cytosol	12.08	22.51
Solyc05g040050.1.1	Tomato	nucleus	17.42	22.09
TraesCS2D01G078000.1	Wheat	cytosol	14.1	21.77
Solyc03g019640.1.1	Tomato	nucleus	20.34	21.74
Solyc07g047690.1.1	Tomato	nucleus	16.92	21.32
TraesCS2A01G080400.1	Wheat	cytosol	16.62	20.5
AT4G27980.2	Thale cress	cytosol	12.08	19.9
CDY27811	Canola	nucleus	9.57	19.83
Solyc01g065570.2.1	Tomato	cytosol	4.73	19.75
OQU83714	Sorghum	cytosol, nucleus, plastid	20.75	19.51
CDY13917	Canola	endoplasmic reticulum, extracellular, mitochondrion	7.55	17.99
Solyc08g005300.1.1	Tomato	nucleus	16.11	17.54
TraesCS2D01G077900.1	Wheat	cytosol	9.47	17.41
Bra002182.1-P	Field mustard	nucleus	18.03	16.5
CDX70844	Canola	mitochondrion, plasma membrane	13.6	15.81
Bra006477.1-P	Field mustard	cytosol	19.23	13.89
Bra039474.1-P	Field mustard	nucleus	21.05	13.7
CDX70841	Canola	nucleus	19.23	13.2
CDY41917	Canola	nucleus	12.39	12.87
CDX88919	Canola	cytosol	18.93	11.89

Protein Annotations

Gene3D:1.10.287.110	MapMan:35.2	InterPro:DUF3444	InterPro:DnaJ_domain	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf
UniProt:K4B0L2	PFAM:PF00226	PFAM:PF11926	PRINTS:PR00625	PFscan:PS50076	PANTHER:PTHR45089
SMART:SM00271	SUPFAM:SSF46565	EnsemblPlantsGene:Solyc01g098250.2	EnsemblPlants:Solyc01g098250.2.1	UniParc:UPI00027685D1	SEG:seg

Description

No Description!

Coordinates

chr1:+:88831818..88835442

Molecular Weight (calculated)

111601.0 Da

IEP (calculated)

8.747

GRAVY (calculated)

-0.727

Length

993 amino acids

Sequence
(BLAST)

001: MDCNKDEAMR AKEVAEKKML NNDFEGAKKV AVKAEQLYPQ LENISQLLAV CNVHCSAQNN RVGSERDWYG ILQIDRLSDE ATVKKQYRRL ALMLHPDKNK
101: LPGAEAAFKL IVEANMVLSD QVKRSLYDSK YRVMSGAGIA KPPPHMVNQN SFVRKTNMQN GFNVQFSNLN HHKYTQPTSS AMQETFWTQC PSCKIRYQYY
201: STYVNSTLRC QKCSKSFTAY NLGFQGAPCG PKWSKPGGQD VPLKSNLNQS SEQKELPNQG ASKMTSGIAG FPPTQTGYRP GCSSRTAGSE PEKCRGKTAP
301: VFEDVRTKQK DEKHEKLKRG MREGCSRPKV DRKSRKRGRK QTVESSESDD TSTSVEIEDV DIDNGNGPPA AQGNGGDGYG ARRSSRRRQH ISYSEGVSDD
401: ENELASRLKK ARSNQPAEDS KTQPKEAVGG DDQHRADFTI PRSNSVERLN QNGAGLPEGD VQNNNSKFET VKDQYSRPPS GGAKKVELIV DSDSESDTVP
501: DSNIPEVYDY PDPEFSDFDK LKEQSCFAPD QVWACYDTAD GMPRFYALIR KVHSPEFKVM FCWLEASPED QKGKTWVSAE LPVGCGKFRL GTTESTSDRL
601: TFSHQVQCEM VKRGMYIVYP RKGETWALFK DWDIGWGFDP DNHRKYKYEI VEILSEYVVD EGVQVGYLDK VTRFVSLFQR TRLTGVGTFY VKPSELFKFS
701: HRIPSFKMTG TERDGVHAGS FELDPASLPL NPDDIWYPEK VMEGSKGANS QPVENVSPAV ASGTRDKSRM SENVTISLKS VELNSIHTTN GESAKVRRSP
801: FQVDQVWALY GRNNMPRTYA QIKKIVPAPF KLHVVLLEAC AGTKNAQVVC GTFKVQSEKC QVYDPSSFSH VVKAVSINRN RFEIYPRDGD IWALYKNWKK
901: LSLHPDTSAY EIVEVIENSK DRIKVSSMVR VNGFKSVFRS PRIQRSNPAI LEIPKDEFGR FSHQIPAFQL TGEKGGVLRG CWELDPASAP CLQ

Best Arabidopsis Sequence Match ( AT5G18750.1 )
(BLAST)

001: MSNKDEALRA KDLAEDWMSK SDFTTARRIA IKAQKMDATL ESVVARMIMV CDVHCAALEK SGDETDWYKI LQVEQTADEN TIKKQYKKLA LHLHPDKNKL
101: PGAESAFKTI GEAQRVLLDK DKRRFHDMRR KPVFRRPAPA PAPAPSFQPP QQAPTTPFFT QRGFQTNVNV ARKRPENQKK PQAQPTGFDG LASFTTSCAF
201: CHRKYEYQRK LINTLMTCLN CGKQYVAFQE TFQPPVQPTF SFFQQSKVPT QEAGKAVEKQ PESCAKSFFS KEGSRAKSSG VSAENINGKR KRKKVVESSD
301: SSCSESSIDC NEVPAGGQDS GSSGAQHSRR SVRSKQQVSY KEDKEEDAES AEESDFRKKS HEDQPFTETL PNGLNRTKKS KAAKNSSSGS ASDAEIQCTD
401: PDFSNFEKSR EVTCFKAGQT WAIYDDMGGM PRYYAIIRKV IRKPSFMLKI QWLEAEPDDE KANLWVRKNL PISIGKFKLG GNENIEKTPC FSHMIYFKVG
501: SMKDTVRVYP RIGETWALFK NWDINWSSGR RRSSHEHEYE YEFVEILSEY VEGVAIQVAF LRKIKGFTSV FCRIAPGGGS DTIQIPPHEL LRFSHSIPST
601: KLTGKEGNGV PIGSYEFDTA ALPQKIEQEE AVPVLRESAK LNQVNHNSPP SSEPDCIVIP NFQFNNFSAE RLEGKFAPGQ IWSLNSKEDG LPKCYAKIQQ
701: IVWRPVFKLQ INRLEPKSLL ENVIQWHDKR MPVSCGNFTL KEGRDETLTK VTDFSHQIKA EKHFRINEYI VVPKTGEIWA MYKNWSETIK ATSLKRCEYE
801: VVEVLDDNDS HIEVMLLEQV DGFISVFKEK LEGGIDVKKK IPRCELLRFS HYVPAFRLTG ERDGALRGYV ELDPSAFPLN LRRS

Arabidopsis Description

DNAJ heat shock N-terminal domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q3E9D9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.